Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 214 3e-49 seq2 167 3e-35 seq1 111 2e-18 >seq6 Length=2655350 Score = 214 bits (236), Expect = 3e-49 Identities = 399/571 (70%), Gaps = 20/571 (4%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAAC--CCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772 |||||| ||||| || ||| |||| || ||||| || ||||| || | ||||| Sbjct 574292 CGAGCCTCTGCTCAAGGAGAACAACCGA--CGGTTTGTGCTCTTCCCTATTCAGTACCAT 574349 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 ||| ||| | |||||| || ||||||||||| || || ||||||||||||||| | || Sbjct 574350 GAGATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGA 574408 Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 |||||| || | || | |||||| | ||| | | ||||||| |||||| Sbjct 574409 TCTCGGCAAGGATATGGGCGACTGGGAGAACCGGCTCAACAGCGACGAGAAGTTTTTCAT 574468 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 |||||| || | |||| || || ||| || || || || ||||||||||| | Sbjct 574469 TTCGCACGTGCT-GGCTTTCTTTGCTGCCTCTGACGGTATTGTCAACGAGAACCTGGTTG 574527 Query 1455950 -GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || | | | || |||||| || || ||||| | || ||||| ||||||||| Sbjct 574528 AGCGGTTCTCTG-GAGAGGTTCAGGCTCCTGAGGCCAAGTGCTTCTACGGATTCCAGATC 574586 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || |||||||| || || |||||||| || || || || || ||| |||||||| Sbjct 574587 ATGATGGAGAACATCCATTCCGAGACCTACTCTCTGCTCATTGATACTTACATCAAGGAC 574646 Query 1456069 CCGGTCGAGAAG-GACC--ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 || | || || || | |||| || |||||| || || | || | | | ||| Sbjct 574647 CC---CAAGGAGCGAACTTACCTGTTCAACGCCATTGAGACCATTCCCTGCATCAAGAAG 574703 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||||||||||||| | ||||||||| | | || | || || ||||| |||||| | Sbjct 574704 AAGGCCGACTGGGCTCTCAAGTGGATCTCCGACGA-CGAGTCTAC-CTTTGGCGAGCGAC 574761 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 | ||| |||||| | ||| ||||| || || ||||| || ||| | |||| || | Sbjct 574762 TTATCGCCTTTGCTGCCGTTGAGGGTATTTTCTTCTCCGGATCTTTTGCCTCCATTTTCT 574821 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || |||||||| || || Sbjct 574822 GGCTCAAGAAGCGAGGTCTCATGCCTGGCCT 574852 >seq2 Length=4150472 Score = 167 bits (184), Expect = 3e-35 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| ||| |||||| || | ||||| |||| || || Sbjct 324638 ACCTACAACTACATGTCCCAGAAGTACTTCACCCACGCTTCCCCCACTCTCTACAACGCT 324697 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | || |||| || ||||| || || | ||||||||| ||| || ||| Sbjct 324698 GGAACCCCCCAGCCCCAGATGTCTTCGTGTTTCCTCGTCAACATGAAGGACGACTCCATC 324757 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| || || |||||| || || |||||||||||| | ||||| || ||| Sbjct 324758 GACGGCATCTACGATACCCTCAAGACCTGTGCTCTCATCTCCAAGTCTGCCGGAGGTATC 324817 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||||| | || ||| | ||| ||||| | || ||||||||||| Sbjct 324818 GGTCTCTCCATCCACAACATTCGAGCCACCGGCTCCTACATTGCCGGCACCAACGGTACC 324877 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||||||||| || || | ||| |||| || || ||||| |||||| Sbjct 324878 TCCAACGGTATCGTGCCCATGCTCCGAGTCTACAACAACACTGCCCGATACGTTGACCAG 324937 >seq1 Length=4845111 Score = 111 bits (122), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| |||||| |||| | ||| Sbjct 761191 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCCGACACCGGT-----ATC- 761138 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| ||||||||||| || |||| || | | | Sbjct 761137 TCCACCCGAGCCATGTCCATCATGAACTCCTTTGTCAACGATATCTTCGAGCGTGTTGCC 761078 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| ||||| || || |||| ||| ||| | || |||||| Sbjct 761077 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 761018 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 ||||| ||||| || || ||| | | ||| || ||||||| ||||||| Sbjct 761017 CAGACTGCCGTCCGACTTATCCTCCCCGGAGAGCTGGCCAAGCACGCC 760970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809367415078