Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 192 8e-44 seq6 183 4e-41 seq2 141 1e-28 >seq5 Length=2743614 Score = 192 bits (212), Expect = 8e-44 Identities = 616/946 (65%), Gaps = 16/946 (2%) Strand=Plus/Minus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 || || ||||| || ||||||||||| || || || | || | | ||||| || ||| Sbjct 1439867 AGAGCCACAGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATC 1439808 Query 69328 TCTGTACATAGATTACTAC-ATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386 || ||||| | ||| | || ||||||| || || ||||| ||||| || || ||| Sbjct 1439807 TCAGTACACAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTT 1439749 Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446 |||| ||| || || || || |||||| || ||||| || ||| || ||| | Sbjct 1439748 ACAGCTGTCTTTATACAGCATGAACGGACCTCCTGTTTCGATTTGACTCGTGAGAATCGC 1439689 Query 69447 TTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGT 69506 || | | || ||| || ||| | ||||| || || || ||||| | | Sbjct 1439688 CTTGAACAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCTTCTTCTCATACTCATT 1439629 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 || | || ||||| || |||||||| |||||| ||| ||| ||| | | || || Sbjct 1439628 GTACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCTCTTCTGGGGCA 1439569 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 | | ||||| || | | | ||| ||||||||| | ||| || | ||| || Sbjct 1439568 GAAAAGCGACCATTTTTCGCCGTTTTCGACTTTTTTCATAAACAAATCAGGCACCCAGAG 1439509 Query 69627 AGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 ||| ||| || || || | | ||| ||||| || || ||||||| | || | Sbjct 1439508 AGC-ATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAAATTCA 1439450 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 |||| |||| |||||| | |||||| || || | ||| | || | |||| ||||||| Sbjct 1439449 GAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGGTCGTT 1439390 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 | ||||| || ||||| | ||| | || || || || | ||||| ||||| |||| | Sbjct 1439389 TGTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGGAACGA 1439330 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 |||| ||| || | | || | ||| | |||| | || | || || || Sbjct 1439329 TACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGCTCCTTTGGCTCTGATGTTGTGAA 1439270 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 || |||||||| |||||||| |||| || || ||||||| ||| | ||||| | Sbjct 1439269 TATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACACGTTTTGAGCGTGTCGT 1439210 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGAT 69985 | || || || ||| || || |||| || ||||||||| || | ||| | Sbjct 1439209 AGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAGGACGAAAGCTGACCCT 1439150 Query 69986 GTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG----AA 70041 | ||| || ||||| || || |||||||| || ||||||||| ||| | || || Sbjct 1439149 GAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTTCTGAGAGATAA 1439092 Query 70042 AGCAGATTGTATGTTTCAATAGC--TGATTCTATATCCCACTGATGAATTCCTATCGCGA 70099 |||||| ||| ||||| | | || | ||| | | || || ||| | | Sbjct 1439091 AGCAGA--GTACGTTTCGAGCACCTTGGTGGTATCGTCTCC--GTGGATGGCTAGTGATA 1439036 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 | ||||| | ||| || ||||||| ||| || | | ||| |||| ||||| | Sbjct 1439035 CTCGCATGAGCATCTGTTGAGGTCTTTCCACTACTCGTCCCTGGATTCTCAAAAGGTACG 1438976 Query 70160 ATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||| || || || ||||| ||| ||| | | |||||| Sbjct 1438975 ATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTCT 1438930 >seq6 Length=2655350 Score = 183 bits (202), Expect = 4e-41 Identities = 397/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || |||||||||| | ||| | ||||| || || || || Sbjct 574909 CAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGG 574850 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| ||||| ||||| |||||||| || |||| ||||||||||| || ||||| Sbjct 574849 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAA 574790 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC----GTA-ACTTGTATCATTAT 39791 || || || || || ||||| || | ||||| ||| || ||| ||| | || | Sbjct 574789 ATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCG--TCGTCGG 574732 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||||||| | ||||| || || |||||||| | || || || || || || || | Sbjct 574731 AGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCGT 574672 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | || || ||| | || | || || | || ||||| || | |||| || Sbjct 574671 TGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTAGG 574612 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || ||||||||||| || ||| ||||| |||||||| || || | || |||| | Sbjct 574611 TCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGGAG 574552 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 || |||||| | | || | || ||| || || || || || || ||| || | Sbjct 574551 CCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGCAG 574492 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCC 40088 |||| || |||| || || ||| ||| | || || ||| | || | || | || Sbjct 574491 CAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTCGCTGTTGAGCCGGTTCTCCC 574432 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| ||||| || | ||| | || || || ||||| || || ||||| |||| Sbjct 574431 AGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCT 574372 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||||| | ||| || ||| | || || || || || | ||||| Sbjct 574371 TCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq2 Length=4150472 Score = 141 bits (156), Expect = 1e-28 Identities = 454/698 (65%), Gaps = 10/698 (1%) Strand=Plus/Minus Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 ||| || || || | || || || | || || || || || || ||||| | | ||| Sbjct 325174 GAACTCGTCACCGTAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATGAGGGTCCA 325115 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | | | | | || ||||| | ||| || || ||||||||||| || || | || || Sbjct 325114 CTCGCCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGAATCCACAGGGCCAGGAACAG 325055 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 |||| || || | || || ||||| || ||| || ||| ||||| | || Sbjct 325054 GTCTCGGGCTCGGATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAT 324995 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 || ||||| || || || || || || | | |||| ||||| || || || ||||| Sbjct 324994 GTCGTCGTGCCAAGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTACCACCCTG 324935 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 || | ||||| ||||||||| || ||||||| ||||| || | ||||| || || | Sbjct 324934 GTCAACGTATCGGGCAGTGTTGTTGTAGACTCGGAGCATGGGCACGATACCGTTGGAGGT 324875 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 ||| || || || | ||| || || | || ||||| || || || ||||| || Sbjct 324874 ACCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGAATGTTGTGGATGGAGAGACCGAT 324815 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938 ||||| || || ||||| |||||||| || | || || || || || || || Sbjct 324814 ACCTCCGGCAGACTTGGAGATGAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGAT 324755 Query 69939 GCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGC 69998 | || || ||||||| | || ||||| |||||| || | || ||||| || Sbjct 324754 GGAGTCGTCCTTCATGTTGACGAGGAAACACGAAGACATCTGGGGCTGGGGGGTTCCAGC 324695 Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTATGTTT 70057 || | | || || || ||||| ||||| | || | || | | || ||||| || | Sbjct 324694 GTTGTAGAGAGTGGGGGAAGCGTGGGTGAAGTACTTCTGGGACATGTAG-TTGTAGGTCT 324636 Query 70058 CAATAGCTGATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 |||| || | || | ||| | || || || | | ||| ||||| | ||| ||| Sbjct 324635 CAATGGCCCGGGCAATGTTGTCACCG-TGGATACCGACAGAGACTCGCATGATCATCTGC 324577 Query 70117 TGAGGTCGTT---CTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 || ||||| | | || | | || | | | |||||||| | ||||| || Sbjct 324576 TGGGGTCGCTCGGCAACAGCT---CCGTTGACTCGAAGCAGGTATGCTCGCTCCAGGGTC 324520 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 70211 || || ||||| |||||||| | ||||||| ||||| Sbjct 324519 TTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTA 324482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908636859160