Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 129 5e-25 seq1 91.5 1e-13 seq2 84.2 2e-11 >seq5 Length=2743614 Score = 129 bits (142), Expect = 5e-25 Identities = 293/431 (68%), Gaps = 21/431 (5%) Strand=Plus/Minus Query 131612 CTGGGACACATTAGCGACCACA---CGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||||| || | |||||||| ||||||| ||| ||| |||||||||||||| Sbjct 1439576 CTGGGGCAGAAAAGCGACCATTTTTCGCCGTT---TTCGACTTTTTTCATAAACAAATCA 1439520 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 |||||||| | || || ||||| || | ||| | || || |||| || || |||||| Sbjct 1439519 GGCACCCAGAGAGCATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCC-ATGATTTTT 1439461 Query 131729 tt-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGC 131787 | |||||| | ||| |||||||| ||||||||||| || |||||||||||||| | || Sbjct 1439460 TCGCAAATTCAGAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGC 1439401 Query 131788 GCC------TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCG 131841 || |||| || || ||||||| ||| | || | | |||||| | || | Sbjct 1439400 TCCAGGTCGTTTG---TTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCT 1439344 Query 131842 CAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG-TAGCTGCCATTGG 131900 | |||||| | | ||| | ||| | | | ||||| |||| || |||| Sbjct 1439343 GAGCATGGGAACGATACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGCT-CCTTTGG 1439285 Query 131901 CTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCAT 131959 ||||||| ||||||| | || || |||||||| || || ||| || || | || || Sbjct 1439284 CTCTGATGTTGTGAATATGCAGACCTATACCTCCTGCTGT-TTTGGAAATCTGAGCACAC 1439226 Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAA 132019 | | || |||| ||||| || || | | ||| || || ||| | || | ||| || Sbjct 1439225 GTTTTGAGCGTGTCGTAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAG 1439166 Query 132020 GAGGACAACTG 132030 || || | ||| Sbjct 1439165 GACGAAAGCTG 1439155 >seq1 Length=4845111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 96897 GGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACAT 96956 || || || || ||||||||||| |||| | |||||||||||| || |||||| || Sbjct 2763556 GGCTTCCACGTGCACGAGTTTGGAGACAACACCAACGGCTGCACCTCCGCCGGCCCCCAC 2763615 Query 96957 TTCAA-CCCTACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGA 97015 ||||| |||| || | | || ||||| || |||| || || ||| || |||||||| || Sbjct 2763616 TTCAACCCCTTCA-AGAAGAACCACGGAGCCCCCAACGACACTGAGCGACACGTTGGAGA 2763674 Query 97016 TCTGGGCAACGT 97027 || |||||||| Sbjct 2763675 CCTCGGCAACGT 2763686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||||| || || || || ||||||||| || | || | |||||| Sbjct 2007200 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCATCTTCG 2007259 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| ||| ||||||| ||||| || ||||| || | ||||| || || Sbjct 2007260 AGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 2007319 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | || || || || || || || | || Sbjct 2007320 ATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTT 2007379 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||| || || |||||| Sbjct 2007380 CCAGTGAGGGTCTTCACGAAAATCTGCATA 2007409 >seq2 Length=4150472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || || || || || |||||||| | | || || Sbjct 3374821 CGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCGGCCG 3374880 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || |||||| ||||||| ||||| || ||||| || | ||||| || Sbjct 3374881 TCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3374940 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| | | || || || || || || Sbjct 3374941 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 3375000 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 | ||||| || || || || ||||||||||||| Sbjct 3375001 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934301601128