Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 250 3e-61 seq6 147 3e-30 seq5 86.0 8e-12 >seq2 Length=4150472 Score = 250 bits (276), Expect = 3e-61 Identities = 1131/1765 (64%), Gaps = 61/1765 (3%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | ||| || |||||||| ||||||||||| || | ||||| |||| | ||| Sbjct 326310 GCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 326251 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAG---GTTCAT--ACTTTGAC 110468 || |||| |||||| ||| || || ||| ||| | | ||| | ||| ||| Sbjct 326250 ATGGAAGTGAGCTTACCCATGGTGGGC---TCCTTGATGTGAATGTTGAGGGACTGGGAC 326194 Query 110469 TTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTT 110528 | ||||||||||| | || | || ||||| || |||| |||| ||| | Sbjct 326193 T--GGTCAATGAAGGGAGATCGGTCGGCGGCCATCTCGATGATTCGCTTCTGGGAAATCT 326136 Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588 |||| || || || || | |||||| || | ||||| | | ||| ||||| | || Sbjct 326135 CCCACACGGTCTTGTACAGCTCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGCACGG 326076 Query 110589 AACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGA 110648 | || | || || | | ||||||| || | ||||||||| | || | Sbjct 326075 ATCCGTTGTCGGCGACAATTCGGTTCTTCATAGTCTCGTTCCAGAGACCGACCTCAACAA 326016 Query 110649 GGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGT 110708 |||| |||| || ||||||||| |||||||| || || || || || Sbjct 326015 GGTCCTTGAGAAGCCAGGGGTTGACAATCTGGAACTCACCGGCAAGAACTCGTCGAGAGT 325956 Query 110709 AGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 110768 | ||||| | ||||| || || ||||| || || || | || || | ||| || | Sbjct 325955 AAATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAGGTAGAAG 325896 Query 110769 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATG-CGTTC- 110826 | || ||||| || || | || ||| ||| || ||||| | || ||| | || Sbjct 325895 CAGTGGGCATAGGAGCGACCAGCAGAGAGTTTCGCAGACCGTGCT---TGACAACCTTGG 325839 Query 110827 -CTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC---ACCTTCCCACATGTCAAACT 110882 |||||| | ||||| || || |||| ||| | | | ||||||||| |||| Sbjct 325838 ACTTGAGGTCGTCCCACTCCCAG---AGCTCGGTGGGGGAAACGTTCCACATGTCGAACT 325782 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA- 110941 | || | || | ||| || ||||| |||| ||||| || |||| ||| | | ||| Sbjct 325781 GCAGGTCTCCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAGGCACCCT---CCTCAA 325725 Query 110942 --GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 |||| || | || ||||| | || | |||| || ||||| || ||||| | Sbjct 325724 TGGCCATCTCCATAGAG-GCCTCGACGGCTCCGTGGTAGATGGTCTCGAAGATCTGGATG 325666 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGC 111057 || | || |||||| || || || ||||| | | || ||| | || || ||| || Sbjct 325665 TTGAGCTTCTTGGCCTCGTCGGACTCAAAGGGG-AGACGCAGAGCCATGAAGGTATCAGC 325607 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 ||||| || ||||||| | | || |||| ||||||||| || ||||| || ||| Sbjct 325606 CAGACCCTGGACACCCAGAGCGATGGGTCGGTGTCGCATGTTGGACTTCTTGGC---CTC 325550 Query 111118 ---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 |||||| || | |||| ||| |||| ||| || ||| || | ||| | Sbjct 325549 GGGAACGGGGTAGTAGTTTCGGTCGATGATGGCGTTGAGGTTTCGCACAATGACCTTGGC 325490 Query 111175 GATTTCATGAAGTTTTTCATAATCA---AAAGTGCGAGTCTCTTC---ATTGACATACTT 111228 || ||||| || || | | || || | | ||||| || | | || | | Sbjct 325489 AATATCATGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTCTCGTCTCGAGTCACGAAAGT 325430 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || || || || || |||| ||||| || || |||||| | | |||||| | Sbjct 325429 GGGCAGAGCAATGGAGGCCAGGTTGCAGACGGCAACCTCATCGGGAGAAGAGTACTCGAC 325370 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||| || ||| | ||||||| ||| || || |||| ||||| ||||| ||| Sbjct 325369 AATCTCGCAACACAGGTTGGAAGACTTGATGGTTCCCAGGTTCTTCTGGTTGGACTTTCG 325310 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 |||||| | ||||||||||||||| |||| | || | ||| ||||| | | |||||| Sbjct 325309 GTTGCAGGAGTCCTTGTAGAGCATGAAGGGGTTTCCGGACTCGGTCTGGCAGTCGAGAAT 325250 Query 111409 AGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGT 111464 | ||| | | || | ||| || |||| ||| |||| |||||||| ||||| Sbjct 325249 GTGGTACCACAGCTTCTG-GGCGGG---GATGGTTCGTCGGCCTCGTCCCTCTCGCTCGT 325194 Query 111465 ACTTTGTGTAGAGGGCTTC--AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| ||| | ||||| ||||| ||||| ||||| ||||| || || Sbjct 325193 ACTGCTCGTACA--GCTTCTTGAACTCGTCACCGTAGACGTCGTCAAGACCGGGGCACTC 325136 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || || || | || | ||| | || | ||| || |||| |||||| ||||| || Sbjct 325135 GTTGGGGCACATGAGGGTCCACTCGCCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGG 325076 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||||||| || || |||| || ||| || | || ||||| ||| Sbjct 325075 AATCCACAGGGCCAGGAACAGGTCTCGGGCTCGGATCTCCTCCTTTCCGTGGTTCTTTCG 325016 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 | ||| |||||| | ||| || ||||||| |||||||| || | || | | ||| Sbjct 325015 CAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAAGGCTCAAGGTACATGGCAAAGGCTCC 324956 Query 111703 CTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 ||| ||| | || | || || || || ||| ||| | || || ||||| Sbjct 324955 GGGTCGCTTGTTACCACCCTGGTCAACGTATCGGGCAGTGTTGTTGTAGACTCGGAGCAT 324896 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 || | ||||| | || ||| || || || ||| || |||||| | Sbjct 324895 GGGCACGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGAAT 324836 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | |||||| | || ||||| || || |||| ||||| | ||||| | | || Sbjct 324835 GTTGTGGATGGAGAGACCGATACCTCCGGCAGACTTGGAGATGAGAGCACAGGTCTTGAG 324776 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 || | ||||| |||| ||| ||||| ||||| || || ||||| || ||||| Sbjct 324775 GGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACGAGGAAACACGAAGACAT 324716 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-T 111998 ||| || || || ||||| ||| |||| || || | ||||| |||| ||| | | Sbjct 324715 CTGGGGCTGGGGGGTTCCAGCGTTGTAGAGAGTGGGGGAAGCGTGGGTGAA-GTACTTCT 324657 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 ||||||| | || ||| ||||| | | | |||||| || |||||||| |||| | Sbjct 324656 GGGACATGTAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCACCGTGGATACCGACAG 324597 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 ||| ||||||| ||| | ||| || Sbjct 324596 AGACTCGCATGATCATCTGCTGGGG 324572 >seq6 Length=2655350 Score = 147 bits (162), Expect = 3e-30 Identities = 298/440 (68%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| |||||||||||||| ||| | || |||||| ||||| |||||||| Sbjct 575185 ACTCGCTTCTCGAAGAAGTTGGTCTTTCCAGCCAGAGAAATGTTCTCCATGAAGTCAAAG 575126 Query 122440 GGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACA 122499 || || | | ||| | | || |||| || ||||| || | |||| Sbjct 575125 GGGTTGGTGGAGTTGTAGACCTTGGGGTTTCCAAGAGCAACAAGCAGACGGTCGGCCACA 575066 Query 122500 TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTGCG 122559 |||||||||||| ||| || | ||||||||||| || ||| ||||| || Sbjct 575065 AACTCAATGTACTGTCGCATGAGCTTGGCGTTCATACCGAGCAGACCACAAGGGAGAGCA 575006 Query 122560 TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCG 122619 || | |||| | | |||||| |||| ||||| | || | | | || | | | Sbjct 575005 TCAGTAAGGAACTCCTGCTCAATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTC 574946 Query 122620 GTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAACTCCTGGTGGAGACC 122678 | | ||||| || | | | || ||||||| |||||| || ||| ||||| Sbjct 574945 TTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACC 574887 Query 122679 CTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTT 122738 ||||||||| ||||| || || || |||||| || || ||||||||||| |||||||| Sbjct 574886 CTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCGCTTCTT 574827 Query 122739 CAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 | ||| |||| | | || || ||||||||||| |||||||| || ||||| || Sbjct 574826 GAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAAAATACCCTCAACGGCAGCAAAGGC 574767 Query 122799 AAAAAGGCGTTCGGCGAAGG 122818 | ||| || ||| | |||| Sbjct 574766 GATAAGTCGCTCGCCAAAGG 574747 >seq5 Length=2743614 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||| | | ||| |||||||| || ||||| ||||||||||| | |||||||| Sbjct 1440498 GTTGACGACTAGAAATTCACCTGCTTGGACTCTTCGGAGGTAGATGTTGGAGGTGTATGG 1440439 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 |||||| || || |||| ||| | ||||| | ||||| ||||| ||||| || || Sbjct 1440438 TTCAAAACACTCGTTATGACCTAGAATTTGAGAAGTGGAAGCTGTAGGCATAGGAGC 1440382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031850842400