Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 331 1e-85 >seq2 Length=4150472 Score = 331 bits (366), Expect = 1e-85 Identities = 434/601 (72%), Gaps = 0/601 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||| | | ||||||||||||||| || | || | | |||||| ||| Sbjct 324585 TCATGCGAGTCTCTGTCGGTATCCACGGTGACAACATTGCCCGGGCCATTGAGACCTACA 324644 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||| |||||||| || ||||| | || || || | ||||||||| || Sbjct 324645 ACTACATGTCCCAGAAGTACTTCACCCACGCTTCCCCCACTCTCTACAACGCTGGAACCC 324704 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || |||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct 324705 CCCAGCCCCAGATGTCTTCGTGTTTCCTCGTCAACATGAAGGACGACTCCATCGACGGCA 324764 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| ||||| | ||||||||||| | || ||||||||| || Sbjct 324765 TCTACGATACCCTCAAGACCTGTGCTCTCATCTCCAAGTCTGCCGGAGGTATCGGTCTCT 324824 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| | || || | |||| | || || || ||||| | || | | Sbjct 324825 CCATCCACAACATTCGAGCCACCGGCTCCTACATTGCCGGCACCAACGGTACCTCCAACG 324884 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| |||||||| |||| ||||||||| ||||| ||||| ||||||||||| Sbjct 324885 GTATCGTGCCCATGCTCCGAGTCTACAACAACACTGCCCGATACGTTGACCAGGGTGGTA 324944 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||| ||||| ||||| ||||||| |||||| | |||| Sbjct 324945 ACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCTTGGCACGACGACATCTTCGAGT 325004 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | ||||||||| ||| || || | || ||||| || ||| |||||||| | Sbjct 325005 TCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATCCGAGCCCGAGACCTGTTCCTGG 325064 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | ||||||||||| ||||| |||||| | || ||| || ||| |||||| ||| | Sbjct 325065 CCCTGTGGATTCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGGCGAGTGGACCCTCA 325124 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||||||| |||||||||||||| || | | ||||||||||| ||||| || || ||| Sbjct 325125 TGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTACGGTGACGAGTTCAAGAAGCTGT 325184 Query 53793 A 53793 | Sbjct 325185 A 325185 Score = 154 bits (170), Expect = 2e-32 Identities = 531/815 (65%), Gaps = 40/815 (5%) Strand=Plus/Plus Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195 || ||||| ||| |||||||| || |||||||| | | ||| |||||| Sbjct 325505 CGAAACCTCAACGCCATCATCGACCGAAACTACTACCCCGTTCCCGAGGCCAAGAAGTCC 325564 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| | || ||||| |||||||| | ||||| ||||| |||| || | ||||||| Sbjct 325565 AACATGCGACACCGACCCATCGCTCTGGGTGTCCAGGGTCTGGCTGATACCTTCATGGCT 325624 Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313 || | | ||||| || || || || | |||| | | || | |||||| || | Sbjct 325625 CTGCGTCTCCCCTTTGAGTCCGACGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 325683 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372 ||||||| | ||| |||||| || | |||| || ||| ||||| ||||| Sbjct 325684 -CATCTACCACGGAGCCGTCGAGGCCTCTATGGAGATGGCCATTGAG-GAGGGTGCCTAC 325741 Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432 ||||| |||| | || || || ||||||| || |||||||| ||| || | | Sbjct 325742 GAGACCTTCCAGGGCTCTCCTGCCTCCAAGGGAGACCTGCAGTTCGAC--ATGTGGAACG 325799 Query 55433 TCTGACCCCAT------------GTTTGAC------AAGTTGAAGCATGACATTCACTTG 55474 | | ||||| || ||| |||| ||| || || ||| Sbjct 325800 TTTC-CCCCACCGAGCTCTGGGAGTGGGACGACCTCAAGTCCAAGGTTGTCAAGCAC--- 325855 Query 55475 TGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATC 55534 || || || ||||| ||||| || || || ||||| || || || || ||||||| Sbjct 325856 ---GGTCTGCGAAACTCTCTGCTGGTCGCTCCTATGCCCACTGCTTCTACCTCTCAGATT 325912 Query 55535 ATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTA 55594 | ||| ||||||| |||||||| ||||| ||||||| ||| || || || Sbjct 325913 CTCGGCTTCAACGAGTGCTTCGAGCCTTACACCTCCAACATTTACTCTCGACGAGTTCTT 325972 Query 55595 GCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || |||||||| || ||||| || |||||||||| || || Sbjct 325973 GCCGGTGAGTTCCAGATTGTCAACCCCTGGCTTCTCAAGGACCTTGTTGAGGTCGGTCTC 326032 Query 55655 TGGAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG 55712 |||||| | || |||| | || ||||| || || | || ||||| ||||| | Sbjct 326033 TGGAACGAGACTATGAAGAACCGA-ATTGTCGCCGA-CAACGGATCCGTGCAGAACATCC 326090 Query 55713 ---AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 | || || | | |||||||| | ||| ||| |||||||||||| | |||||| Sbjct 326091 CCAACATCCCCCAGGAGATCAAGGAGCTGTACAAGACCGTGTGGGAGATTTCCCAGAAGC 326150 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 | | || || ||| || || || | | | ||| |||||||||||||| || |||| Sbjct 326151 GAATCATCGAGATGGCCGCCGACCGATCTCCCTTCATTGACCAGTCCCAGTCCCTCAACA 326210 Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 | ||| || | || | ||| ||| | | || |||||||| ||||| ||||||| Sbjct 326211 TTCACATCAAGGAGCCCACCATGGGTAAGCTCACTTCCATGCACTTCTACGGCTGGAAGA 326270 Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||| |||||||| ||||||||||| ||||| ||| Sbjct 326271 AGGGTCTCAAGACCGGTATGTACTACCTGCGAACC 326305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215870036200