Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7 179 3e-40 seq5 84.2 2e-11 >seq7 Length=1104867 Score = 179 bits (198), Expect = 3e-40 Identities = 411/612 (67%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 ||||| | ||||||| |||| ||| ||||| |||||||||| |||| | | |||| Sbjct 845654 TTCAGAGCATCCACGTGATCCTTGTACACGTGCGCGTCTCCCATAGTGTGAATGAGCTCT 845595 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || || || | || || || || ||||| ||||| | || ||| ||||| Sbjct 845594 CCACAGTCCAGATCCGTCACCTGGGCAATCATTCGTGTGAGCAAAGCGTACGACGCGATA 845535 Query 29993 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGA----- 30047 || ||||| || ||||| |||| ||| | |||| |||||| || || || || | Sbjct 845534 TTGAAGGGAACACCGAGTCCCAAGTCACATGACCGCTGGTACAGTTGGCATGACAACCGA 845475 Query 30048 ----GCTCTCCGTCGCT------CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGA 30097 |||| ||| | |||||||||||| || | ||| || ||||| ||| Sbjct 845474 CCTCGCTCAGAGTCTTTGTACGACACGTAAAACTGGCAAAACATGTGACAAGGAGGCAGA 845415 Query 30098 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 30157 ||||||| || ||| |||||||||||| | | ||||| || ||||||| ||| Sbjct 845414 GCCATGATTTTCAGGTCAGCGGGGTTCCAGGCTGAAAGAATGATTCGTCTGTCTTGAGGG 845355 Query 30158 TTG--TTCCTGA-TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 30214 || || | || || | ||| | |||| ||||||||||| ||| || | ||| Sbjct 845354 TTAGTTTTCAGAGTGTGAATCAC--CTGTTTG-AGCTGATCCACACCCTGACCGGTGTAA 845298 Query 30215 TCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 |||| ||| ||| ||||||||||||| ||||| | ||| ||||| || || || || Sbjct 845297 TCTGTG-TCACAATCCTTGTACTCTGCTCCAAAATGACGCCATTGGAAGCCATAGACAGG 845239 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||||| || || || | ||| | || || ||| |||| ||| || |||| || Sbjct 845238 TCCCAGATCACCTTCACGTCGGTGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGACCC 845179 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 || |||||||||| | | || || || | ||| || |||| |||| Sbjct 845178 ATTTCCGTCCCAGATGTGGATATTTTTGTCGCTCAGTTTCTTGCCGTCTGTGCACCCAGA 845119 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 || ||||| ||||| ||||||| ||| | | ||||||| ||||| || ||||| || Sbjct 845118 CACAAACCAGAGCAGTTCCTCCAAAACGCCTCTGTAAAAGACTCTCTTAGTGGTGAGTAG 845059 Query 30454 -GGGAAACTGTC 30464 |||| | |||| Sbjct 845058 AGGGAGAATGTC 845047 >seq5 Length=2743614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/186 (72%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788 |||||||||| || || | || ||| | ||| |||| || ||||||||||| || Sbjct 360082 TCGTCAAGGTAAGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCATCTC 360141 Query 52789 -TCACGGCGCAAAAGGGGACGTGCGGAGC--CGTCCTGACCCAGGAGGACATGCC--CTT 52843 |||||| || ||||| || || | ||| ||| | ||||||||||| || Sbjct 360142 GTCACGGA-CAGAAGGGAACCATTGGTGTTACGTTTAGACAC--GAGGACATGCCGTTTT 360198 Query 52844 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 52903 || | || || ||||||||||| |||||||||||||||||||| |||| || | || Sbjct 360199 CGGC--CGAGGGAGTGGTGCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTAT 360256 Query 52904 GACCGT 52909 |||||| Sbjct 360257 GACCGT 360262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310305913748