Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 125 4e-24 seq1 109 3e-19 >seq2 Length=4150472 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| || | |||||||||| |||||| || ||||| || || ||| Sbjct 3070617 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 3070558 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || |||||||| || || | ||||| |||||||| || Sbjct 3070557 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3070498 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| |||||| Sbjct 3070497 ATTCCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 3070439 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || |||||||| | || || |||||||||||||| Sbjct 3070438 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 3070391 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| || | |||||||||| |||||| || ||||| || || || Sbjct 3374809 CCACCTCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3374868 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 3374869 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3374928 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| |||||| Sbjct 3374929 ATGCCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 3374987 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || | ||| || || || || || | || || ||||| || |||| Sbjct 3374988 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 >seq1 Length=4845111 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || || | ||| | ||||||||| ||||| || |||||||| || || Sbjct 2006530 GCCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGA 2006589 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| |||| ||||| || |||||||| || || | ||||| |||||||| || Sbjct 2006590 AAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 2006649 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | ||| ||||| | ||| | Sbjct 2006650 GATACCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAA 2006708 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || || ||||| |||||||| Sbjct 2006709 CCTCAAGAGTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||| ||||||||| |||||| || ||||| || || || Sbjct 2007182 CCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2007241 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| || || ||||| || || || | ||||| |||||||| || Sbjct 2007242 AGAGTTCGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 2007301 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || || | ||| ||||| | ||| || Sbjct 2007302 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 2007360 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| ||||||||||| Sbjct 2007361 CTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | || | ||| || ||| |||||| || ||||| ||||| || Sbjct 2006954 CCACCTCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 2007013 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||| || |||||||| || || | ||||| |||||||| || Sbjct 2007014 AGAGTTCGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 2007073 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || ||| | ||| ||||| ||| || Sbjct 2007074 ATTCCCTCCTTGTC-CTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAAC 2007132 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || || ||||| |||||||| Sbjct 2007133 CTCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || | |||| |||||||||| |||||| |||||||| || || || Sbjct 2007638 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2007697 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||| || || || || || || | ||||| |||||||| || Sbjct 2007698 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGG 2007757 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||||||| Sbjct 2007758 ATTCCCTCCTTGTC 2007771 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || | || | ||| || ||| |||||| || ||||| || || || Sbjct 2007410 CCACCTCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2007469 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| ||||| || || || || || || | ||||| |||||||| || Sbjct 2007470 AGAGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGG 2007529 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || | || ||| | ||| ||||| ||| || Sbjct 2007530 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGAC 2007588 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || |||||||| Sbjct 2007589 CTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729527120427