Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 201 3e-46 seq2 178 3e-39 >seq1 Length=4845111 Score = 201 bits (222), Expect = 3e-46 Identities = 177/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| || ||||| |||||||| || |||||||| ||||| | || || Sbjct 2006960 CGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTT 2007019 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || |||||||| || ||||||||||| || || ||||| || |||| ||| Sbjct 2007020 CGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 2007079 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| || ||||||||||| ||||||||||| Sbjct 2007080 TCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGG 2007139 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || |||||||| ||||| | |||||| Sbjct 2007140 GTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180 Score = 196 bits (216), Expect = 1e-44 Identities = 176/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || |||||||| |||||||| || || ||||||||||| || | |||||| Sbjct 2006537 CGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGAAAGGGTT 2006596 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || ||||||||||| || || ||||| || || | || Sbjct 2006597 CGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCC 2006656 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| || |||||||| ||| |||||||| ||| Sbjct 2006657 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGA 2006716 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || |||||||| ||||| | |||||| Sbjct 2006717 GTGATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| || || ||||| ||||| || |||||||| || || | || || Sbjct 2007188 CGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 2007247 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| |||||||| || ||||| || || || || ||||| || |||| ||| Sbjct 2007248 CGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCC 2007307 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || || |||||||| ||| || ||||| || Sbjct 2007308 TCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGG 2007367 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| ||||| ||||| || || | |||||| Sbjct 2007368 GTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| |||||||| ||||| |||||||| || |||||||| || || | || || Sbjct 2007416 CGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTT 2007475 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || ||||| || || || || ||||| || || | ||| Sbjct 2007476 CGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCCC 2007535 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| || ||||||||||| || ||||| || Sbjct 2007536 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGG 2007595 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | |||||| Sbjct 2007596 GTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Score = 122 bits (134), Expect = 2e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| || || ||||||||||| || || ||||| || || | ||||| Sbjct 2007644 CGGAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTT 2007703 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || |||||||| || |||||||| || || || ||||| || || | ||| Sbjct 2007704 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATTCCC 2007763 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||||| ||||| || ||||| ||||| || || ||| ||||||| Sbjct 2007764 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCGGAGGACTCAACCT 2007818 >seq2 Length=4150472 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||||||||||| || |||||||| || || | |||||| Sbjct 3070611 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 3070552 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || |||| ||| Sbjct 3070551 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 3070492 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 3070491 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 3070432 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| ||||| || || || ||||| ||||| | |||||||| Sbjct 3070431 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || ||||| || ||||||||||| || |||||||| || || | || || Sbjct 3374815 CGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTT 3374874 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| ||||| || || || || ||||| || |||| || Sbjct 3374875 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCC 3374934 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| || |||||||| || || |||||||| Sbjct 3374935 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGG 3374994 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 ||||| ||||| || || || ||||| ||||| | |||| Sbjct 3374995 GTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151717818935