Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7 192 4e-44 seq5 96.9 3e-15 >seq7 Length=1104867 Score = 192 bits (212), Expect = 4e-44 Identities = 416/612 (68%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 ||||| | |||||||||||| ||| ||||| |||||||||| ||||| | | |||| Sbjct 845654 TTCAGAGCATCCACGTGATCCTTGTACACGTGCGCGTCTCCCATAGTGTGAATGAGCTCT 845595 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258 || || || | || || || || ||||| ||||| | || ||| ||||| Sbjct 845594 CCACAGTCCAGATCCGTCACCTGGGCAATCATTCGTGTGAGCAAAGCGTACGACGCGATA 845535 Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGA-----GA 27313 || ||||| || ||||| |||| ||| | |||| |||||| || || || || || Sbjct 845534 TTGAAGGGAACACCGAGTCCCAAGTCACATGACCGCTGGTACAGTTGGCATGACAACCGA 845475 Query 27314 GCTCTC-CATCG-CTT--------ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGA 27363 ||| | || | ||| ||||||||||| || | ||| || ||||| ||| Sbjct 845474 CCTCGCTCAGAGTCTTTGTACGACACGTAAAACTGGCAAAACATGTGACAAGGAGGCAGA 845415 Query 27364 GCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG 27423 ||||||| || ||| |||||||||||| | | ||||| || ||||||| ||| Sbjct 845414 GCCATGATTTTCAGGTCAGCGGGGTTCCAGGCTGAAAGAATGATTCGTCTGTCTTGAGGG 845355 Query 27424 TTG--TTCCTGA-TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAG 27480 || || | || || | ||| | |||| ||||||||||| ||| || | ||| Sbjct 845354 TTAGTTTTCAGAGTGTGAATCAC--CTGTTTG-AGCTGATCCACACCCTGACCGGTGTAA 845298 Query 27481 TCTACCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 ||| ||| ||| ||||||||||||| ||||| | ||||||||| || || || || Sbjct 845297 TCTGTG-TCACAATCCTTGTACTCTGCTCCAAAATGACGCCATTGGAAGCCATAGACAGG 845239 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 |||||| || || || | ||| | || || ||| |||| ||| || |||| || Sbjct 845238 TCCCAGATCACCTTCACGTCGGTGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGACCC 845179 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 || |||||||||| | | || ||| || | ||| || |||| |||| Sbjct 845178 ATTTCCGTCCCAGATGTGGATATTTTTGTCGCTCAGTTTCTTGCCGTCTGTGCACCCAGA 845119 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 27719 || ||||| ||||| ||||||| ||| | | ||||||| ||||| || ||||| || Sbjct 845118 CACAAACCAGAGCAGTTCCTCCAAAACGCCTCTGTAAAAGACTCTCTTAGTGGTGAGTAG 845059 Query 27720 -GGGAAACTGTC 27730 |||| | |||| Sbjct 845058 AGGGAGAATGTC 845047 >seq5 Length=2743614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/186 (74%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 48509 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-C 48567 |||||||||| || || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 360082 TCGTCAAGGTAAGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCATCTC 360141 Query 48568 TTCACGGCGCAAAAGGGGACATGTGGAGC--CGTCCTGACCCAGGAGGACATGCC--CTT 48623 |||||| || ||||| || ||| | ||| ||| | ||||||||||| || Sbjct 360142 GTCACGGA-CAGAAGGGAACCATTGGTGTTACGTTTAGACAC--GAGGACATGCCGTTTT 360198 Query 48624 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 48683 || | || || ||||||||||| |||||||||||||||||||| |||| || | || Sbjct 360199 CGGC--CGAGGGAGTGGTGCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTAT 360256 Query 48684 GACCGT 48689 |||||| Sbjct 360257 GACCGT 360262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507114435989