Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq6 167 3e-36 seq2 131 2e-25 >seq5 Length=2743614 Score = 178 bits (196), Expect = 2e-39 Identities = 625/957 (65%), Gaps = 42/957 (4%) Strand=Plus/Minus Query 77678 AGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTC 77737 ||| | ||| || ||||||||||| || || || | || | ||||| || ||||| Sbjct 1439865 AGCCACAGAAGCCAGATTACAAACAGCAACTTCTTCAGGAGACGAGTATTGAATAATCTC 1439806 Query 77738 GGTACATAGATTACTAC-ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC 77796 ||||| | ||| | || ||||||| || || ||||| || |||||| || || | Sbjct 1439805 AGTACACAAATT-CGACGATTTGATCGTACCGAGATTCTGCTGGTTGGATTTCGCGTTAC 1439747 Query 77797 ATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG--ATAATAGA 77854 | ||| ||||| || || |||||| || ||||| || || | ||| | ||| | Sbjct 1439746 AGCTGTCTTTATACAGCATGAACGGACCTCCTGTTTCGATTTG--ACTCGTGAGAATCGC 1439689 Query 77855 TTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTT-TCATATTGAG 77913 || | | | ||| || || ||| ||||| ||| || |||| ||||| | | Sbjct 1439688 CTTGAACAGCTCCTGAGCGTTGATTTGAGAATTGTACAGCCCCT-TCTTCTCATACTCAT 1439630 Query 77914 TATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG-GCA-TTCATTTGG 77971 | || | || || || || |||||||| |||||| ||| ||| || || ||| | || Sbjct 1439629 TGTACAACCTCTCGAAATCGTCTCCCCAGACATCAGCCAGTCCTGGAGCTCTTC--TGGG 1439572 Query 77972 GCACATCAATGACCAGT---CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTAT 78028 ||| | | ||||| | | || | ||| ||| ||||||||| | |||||| | Sbjct 1439571 GCAGAAAAGCGACCATTTTTCGCCGTTTTCG---ACTTTTTTCATAAACAAATCAGGCAC 1439515 Query 78029 CCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAG 78088 ||| |||||| || || || || | ||| | ||| || || ||| ||| | Sbjct 1439514 CCAGAGAGCATAGAACAGGTCACGTGCTCTGTTTTCCTCTGCGCCATGATTTTTTCGCAA 1439455 Query 78089 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGG 78148 || ||||| |||| |||||| | |||||| || || | ||| | ||| | ||||||| Sbjct 1439454 ATTCAGAAAATCCAAAATATCCGCATGCCAAGGCTCCAAATACACTGCAAACGCTCCAGG 1439395 Query 78149 TCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG 78208 |||||| || || || ||||| | || | ||||| || || | ||||| | ||| || Sbjct 1439394 TCGTTTGTTTCCCCCTTGATCAACGTACCGTGCGGTATTGTTGAACACTCTGAGCATGGG 1439335 Query 78209 AATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATT 78268 || ||||| ||| ||| | | || | ||| | ||| | || | || || Sbjct 1439334 AACGATACCTGAAGACCGTCCTTGAGAACCTGTAATGAGAGCTCCTTTGGCTCTGATGTT 1439275 Query 78269 ACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 ||| | ||||| |||||||| | || || || |||| || ||| | || Sbjct 1439274 GTGAATATGCAGACCTATACCTCCTGCTGTTTTGGAAATCTGAGCACACGTTTTGAGCGT 1439215 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 |||||||| || || || ||| | |||| || ||||||||| || | || Sbjct 1439214 GTCGTAGATGCCGTCAATGGAGTCTGCTGCCATGGCAACGAGAAAACAGGACGAAAGCTG 1439155 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG- 78447 | ||| ||| |||||||| || || || ||||| ||||| || ||| ||| | || Sbjct 1439154 ACCCTGAGGAGTACCTGCATTGAACAAGGTAGGAGAAGCATGAGTGAAC--TTTCTGAGA 1439097 Query 78448 ---AAAGTAGATTGTATGTTTCAATAGC--TGATTCTAT-GTC-CCATTGATGAATTCCT 78500 |||| ||| ||| ||||| | | || | ||| ||| || | |||| || Sbjct 1439096 GATAAAGCAGA--GTACGTTTCGAGCACCTTGGTGGTATCGTCTCCGTGGATG----GCT 1439043 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAAC----CGTCTTATTATTTATTTT 78556 | | ||| ||||| | ||| || ||||||||||| || |||| | ||| | Sbjct 1439042 AGTGATACTCGCATGAGCATCTGTTGAGGTCTTTCCACTACTCGTC----CCTGGATTCT 1438987 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||| | ||| ||||||||||| || || || ||||| ||| ||| | | |||||| Sbjct 1438986 CAAAAGGTACGATTTTTCCAACGTCTTGAATCCAAAGTAGGAGTAAGTGAGGTCTCT 1438930 >seq6 Length=2655350 Score = 167 bits (184), Expect = 3e-36 Identities = 393/590 (67%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || || ||||| ||||||| | ||| | ||||| || || || || Sbjct 574910 ACAGGCAAAGTCGGTGTGCAGACCCTCATCTCGAGAAATGAGCTCGTTGGAGAAGGTCAG 574851 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || || || |||||||| || || | || |||||||| || ||||| Sbjct 574850 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAAGATCCGGAGAAGAA 574791 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTA-ACTGGCTTCGTTG 48314 || || || ||||| ||||| ||| |||||| ||| || ||| ||| | |||| | Sbjct 574790 AATACCCTCAACGGCAGCAAAGGCGATAAGTCGCTCGCCAAAGGTAGACTCG--TCGTCG 574733 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 |||||| | ||||| || ||||||||||| | || || || || || || || Sbjct 574732 GAGATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGGTCTCAATGGCG 574673 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || || || | || || ||| || || | ||||||||| || | ||| || Sbjct 574672 TTGAACAGGTAAGTTCGCTCCTTGGGGTCCTTGATGTAAGTATCAATGAGCAGAGAGTAG 574613 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 | ||||| || || || || || ||||| |||||||| || || | || || | Sbjct 574612 GTCTCGGAATGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCACTTGGCCTCAGGA 574553 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 ||| ||||| | | || || ||| ||| ||||| || || || || ||| ||| Sbjct 574552 GCCTGAACCTCTCCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATACCGTCAGAGGCA 574493 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT---TGGAAGTCAGTTTATTC 48611 ||||| || || | || || ||| ||| | || |||| || | | || | | Sbjct 574492 GCAAAGAAAGCCAGCACGTGCGAAATGAAAAACTTCTCGTCGCTGTTGAGCCGGTTCTCC 574433 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 ||||| ||||| || | ||| | || || || ||||| || || ||||| || Sbjct 574432 CAGTCGCCCATATCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCC 574373 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || || ||||| | ||| || ||| ||| || || ||||| | ||||| Sbjct 574372 TTCTTGTACATCTGCCAAATCTCATGGTACTGAATAGGGAAGAGCACAAA 574323 >seq2 Length=4150472 Score = 131 bits (144), Expect = 2e-25 Identities = 342/519 (66%), Gaps = 2/519 (0%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || ||||| || || |||||||| | | ||| || || | | || ||||| | ||| Sbjct 325146 CCGGGGCACTCGTTGGGGCACATGAGGGTCCACTCGCCGTTCTGCTCGACTCGCTCCATG 325087 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || ||||| || || | || || ||||||| || || || ||||| Sbjct 325086 AACAGGTCGGGAATCCACAGGGCCAGGAACAGGTCTCGGGCTCGGATCTCCTCCTTTCCG 325027 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| || ||| ||||| | || || ||||| || || || || || Sbjct 325026 TGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAAGGCTCAAGGTACATG 324967 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | |||| ||||| || ||||| ||||| || | |||| ||| ||||| || || Sbjct 324966 GCAAAGGCTCCGGGTCGCTTGTTACCACCCTGGTCAACGTATCGGGCAGTGTTGTTGTAG 324907 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 |||| | ||| || | |||||||| || || || || || || | ||| || || Sbjct 324906 ACTCGGAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAGGAGCCG 324847 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || ||||| || ||||| | || || ||||| || ||| || || ||||| Sbjct 324846 GTGGCTCGAATGTTGTGGATGGAGAGACCGATACCTCCGGCAGACTTGGAGATGAGAGCA 324787 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || || | ||||||||||| || || || ||| ||| ||||||| | || ||| Sbjct 324786 CAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACGAGGAAA 324727 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || |||||| || | || ||||| || || | | || || || || || || Sbjct 324726 CACGAAGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGAGTGGGGGAAGCGTGGGTG 324667 Query 78435 AACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGC 78472 || | || | || | |||| ||||| || ||||| || Sbjct 324666 AAGTACTTCTGGGACATGTAG-TTGTAGGTCTCAATGGC 324629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668635016160