Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016- 03-01] 19 sequences; 21,758,297 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq2 123 6e-23 >seq1 Length=4845111 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| ||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 2007191 AGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGT 2007250 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || ||||| || || | ||||||||||| | ||||| ||| Sbjct 2007251 CCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2007310 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || |||||| | || | | |||| || ||| || ||||| ||| Sbjct 2007311 TTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTA 2007370 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||| | |||||| Sbjct 2007371 ATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||||||||||||||| || ||||| || ||||||||||| || | | ||||| Sbjct 2007418 GAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCG 2007477 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || ||||| || || | ||||||||||| | |||||| Sbjct 2007478 TCCGTCCTCAAGCTGCTTT--CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGGATTCCC 2007535 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || ||||| | || | | |||| ||| ||| || ||||| Sbjct 2007536 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGG 2007595 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || || ||||| ||||||| |||||| Sbjct 2007596 GTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| |||||| |||||||| || ||||| || |||||||||||||| | | ||||| Sbjct 2006963 AGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTTCGT 2007022 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || |||||||||||||| | ||||||||||| | ||||| ||| Sbjct 2007023 CCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 2007082 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||||| | || | | |||| ||| ||| || || || || Sbjct 2007083 TTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGGGTG 2007142 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || |||| |||||| Sbjct 2007143 ATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| ||||| || ||||| || || || |||||||| || || | | |||| Sbjct 2006539 GAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCAGAAAGGGTTCG 2006598 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||| || || Sbjct 2006599 TCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTC 2006658 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| || ||| || |||||||| Sbjct 2006659 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCAAGAGT 2006718 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || |||||||| || |||| |||||| Sbjct 2006719 GATAGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2006757 Score = 102 bits (112), Expect = 2e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| ||||| ||||| ||||| || || |||||||| |||| | |||| Sbjct 2007646 GAGTCGGAGGACCAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCG 2007705 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || |||||||| || | ||||||||||| | |||||| Sbjct 2007706 GCCATCCTCAAGCTGCTTT--CCAGCGAAGATGAGTCGCTGCTGGTCCGGGGGGATTCCC 2007763 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| || ||||| || Sbjct 2007764 TCCTTGTCCTGAATCTT 2007780 >seq2 Length=4150472 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 3070609 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCG 3070550 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | ||||| || Sbjct 3070549 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTC 3070490 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 3070489 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 3070430 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||||| || || || || ||||| || || | |||||||| Sbjct 3070429 GATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 3070389 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || |||||||| ||||| ||||| || ||||||||||| || | | ||||| Sbjct 3374817 GAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTTCG 3374876 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||||||||||| | || || || Sbjct 3374877 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTC 3374936 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 3374937 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGT 3374996 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || ||||| || || ||||| || |||| |||| Sbjct 3374997 GATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820519116749