Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 5e-24
seq2 116 3e-21
>seq1
Length=4845111
Score = 125 bits (138), Expect = 5e-24
Identities = 171/235 (73%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| |||| | ||||| || || || |||||| ||||||||||| ||
Sbjct 2007178 CATACCACCTCGAAGTCGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 2007237
Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| || | || || |||||||| || || || || | |||||||| ||
Sbjct 2007238 GGACAGAGTT--CGTCCATCTTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCC 2007295
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282
| || | || ||||| ||| ||||| ||| || ||| | |||||||||| ||
Sbjct 2007296 GGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT--CAATGGTGTCGGAGG 2007353
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| | ||||| |||||||| ||||||||||||||||| || |||||
Sbjct 2007354 ACTCGACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTCACGAAAATCTGCAT 2007408
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168
|| |||| |||| | || || ||||| ||| |||||| |||||||||||||| |
Sbjct 2006954 CCACCTCGAAGTCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 2007013
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
||||| || | || || |||||||| ||||| ||||| | |||||||| || | |
Sbjct 2007014 AGAGTT--CGTCCATCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 2007071
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| | || ||||| ||| ||||| ||| | | | |||||||| | || || |
Sbjct 2007072 GAATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATGGTGTCAGAAGACTCAA 2007131
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || || |||||||| || || ||||| || ||||| |||||
Sbjct 2007132 CCTCGAGGGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 2007180
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| |||| | || || ||||| ||| |||||| ||||||||||| ||
Sbjct 2007406 CATACCACCTCGGAGTCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 2007465
Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
| ||||| || |||| || |||||||| || || || || | |||||||| ||
Sbjct 2007466 AGACAGAGTT--CGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGTCGCTGCTGGTCC 2007523
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284
| || | || ||||| ||| ||||| ||| | | | |||||||| | ||
Sbjct 2007524 GGGGGGATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGAC 2007583
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| | || || ||||| || || |||||||| |||||||| |||||
Sbjct 2007584 TCGACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2007636
>seq2
Length=4150472
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| |||| || || || || || ||| |||||| ||||||||||| ||
Sbjct 3374806 ATACCACCTCGGAGTCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 3374865
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| ||| || |||| || |||||||| ||||| || || | |||||||| || |
Sbjct 3374866 GAGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCCGGG 3374925
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | || ||||| ||| ||||| ||| | | | |||||||||| || |||
Sbjct 3374926 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCC 3374985
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336
||||| | || || ||||| || || |||||||| || ||||||||||
Sbjct 3374986 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 3375034
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| |||| |||| || || || || || ||| |||||| ||||||||||| || |
Sbjct 3070617 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 3070558
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || |||| || |||||||| ||||| ||||| | |||||||| || | ||
Sbjct 3070557 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3070498
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| || ||||| ||| ||||| ||| | | | |||||||||| || ||||||
Sbjct 3070497 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3070438
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | || || ||||| || || |||||||| || || || |||||
Sbjct 3070437 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 3070391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990316639723
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |