Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030694_20[genbank_20GCA_5F001600515.1_202016-
03-01] 19 sequences; 21,758,297 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 174 4e-38
seq2 170 5e-37
>seq1
Length=4845111
Score = 174 bits (192), Expect = 4e-38
Identities = 162/206 (79%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || ||||| || |||||||||||||| || || |||
Sbjct 2007177 CAGATCTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGAC 2007118
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 2007117 ACCATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2007058
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || ||||| || |||||| | ||||| | ||||| ||| ||
Sbjct 2007057 CGACTTATCTTCGCCGGTAAGCAGCTTGAGGATGGACGAACTCTGTCTGATTACAACATC 2006998
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 2006997 CAGAAGGAGTCCACCCTTCATCTCGT 2006972
Score = 174 bits (192), Expect = 4e-38
Identities = 162/206 (79%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || ||||| ||||| || || ||||| ||||| || ||| |||
Sbjct 2007405 CAGATTTTCGTGAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTCGAGTCCTCCGAC 2007346
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 2007345 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2007286
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || ||||| || || ||||||||||||||| | ||||| |||| || ||| ||
Sbjct 2007285 CGACTCATTTTCGCTGGTAAGCAGCTCGAAGATGGACGAACTCTGTCCGACTACAACATC 2007226
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 2007225 CAGAAGGAGTCTACTCTCCATCTGGT 2007200
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || ||||| || ||||| || ||||| || ||| |||
Sbjct 2006754 CAGATCTTTGTCAAGACTCTGACTGGAAAGACTATCACTCTTGAGGTTGAGTCCTCCGAC 2006695
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 2006694 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 2006635
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || ||||| || || ||| | || ||| | || |||||| ||
Sbjct 2006634 CGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTTTCTGACTATAACATC 2006575
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || ||||| || || || ||||| | ||||| ||
Sbjct 2006574 CAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGA 2006536
Score = 156 bits (172), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| ||||| || || |||
Sbjct 2007633 CAGATCTTCGTCAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTCGAGTCTTCTGAC 2007574
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 2007573 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 2007514
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || ||||| ||||| ||||| || || ||| | ||||| | || || ||| ||
Sbjct 2007513 CGACTCATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACTCTGTCTGACTACAACATC 2007454
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || |||||||| | ||||| ||
Sbjct 2007453 CAGAAGGAGTCCACCCTTCATCTTGTCCTCCGACTCCGA 2007415
Score = 123 bits (136), Expect = 6e-23
Identities = 127/166 (77%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 177977 CTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036
||| || || ||||| |||||||| |||||||||||||| || |||||||| |||||
Sbjct 2007808 CTCCGATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGA 2007749
Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
|||||| ||||| |||||||| ||||| ||||| || ||||| | || || |||| ||
Sbjct 2007748 CCAGCAGCGACTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTA 2007689
Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||| | || || || || || || ||||| || | ||||| ||
Sbjct 2007688 CAACATTCAGAAGGAGTCCACTCTCCATCTGGTCCTCCGACTCCGA 2007643
>seq2
Length=4150472
Score = 170 bits (188), Expect = 5e-37
Identities = 169/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || || || || || || |||||||| |||||||| || |||
Sbjct 3070394 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 3070453
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || ||||| || |||||||||||
Sbjct 3070454 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 3070513
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | || ||| | || || ||| ||
Sbjct 3070514 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 3070573
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| || ||||| ||
Sbjct 3070574 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 3070612
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || || || ||||||||||||||||| || |||
Sbjct 3375032 CAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 3374973
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || || || |||||||||||
Sbjct 3374972 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 3374913
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| || |||||||| || |||||||| || || | ||||| | || || ||| ||
Sbjct 3374912 CGACTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCTGACTACAACATC 3374853
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||||||| || ||||| ||
Sbjct 3374852 CAGAAGGAGTCCACTCTCCATCTTGTTCTGCGACTCCGA 3374814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730906966686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |