Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 134 3e-26 seq1 120 6e-22 >seq5 Length=2767003 Score = 134 bits (148), Expect = 3e-26 Identities = 571/891 (64%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| || | ||| || ||| | |||||||||||||| | ||| |||||||| Sbjct 1871866 TTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGG 1871925 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC---TCAAT 229875 ||| | ||||| || ||| | ||| | | ||||||| ||||| | |||| Sbjct 1871926 ACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGG---GAGAACCGGCTCAAC 1871982 Query 229876 GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATT 229935 ||||||| || |||||| ||| | || | || || || | |||||||||||| Sbjct 1871983 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 1872042 Query 229936 GTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 |||| || || ||| | | | | | | | | | || ||| || ||||| | Sbjct 1872043 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTGCAGGTCCCCGAGGCCAAGTG 1872101 Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054 || || | | ||| | | | || ||||| || ||| || | ||||| || Sbjct 1872102 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGAT 1872161 Query 230055 CGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACAT 230114 |||| | || ||| | || || | | | || || | ||||| || | ||| Sbjct 1872162 CGACACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 1872221 Query 230115 CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGG--CTAGAAC--CTGGTAAAT 230170 ||| | | || ||||| | ||||| | || ||| || || | || | Sbjct 1872222 CCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGAC 1872281 Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 | |||| |||||| || |||||| | || || || || | || ||||| | Sbjct 1872282 C-TTTGGCGAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 1872340 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 || | ||||||| ||||| ||| |||| | ||||| |||||| | || |||| Sbjct 1872341 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACG 1872400 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAG 230349 || ||||| || ||||||||||| || || | | || | | || | | || | Sbjct 1872401 AGCTCATCTCCCGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCGCAC 1872459 Query 230350 CTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAA 230406 ||| ||||| | ||| | | ||| | ||| | | | ||| || || |||| Sbjct 1872460 CTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGT 1872516 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466 | ||| |||||||| | |||||| | || || | || | || |||||||| | Sbjct 1872517 ATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAACGCCAAG 1872576 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | |||||||| || || || |||||||| | | ||||| || || || Sbjct 1872577 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCC 1872636 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || || |||||||| | |||||||| | || |||||| ||| ||||| || ||| Sbjct 1872637 AAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAG 1872696 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||||| ||||| || ||||| |||| | | || || ||| Sbjct 1872697 ACCAACTTCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGCGTCATG 1872747 Score = 131 bits (144), Expect = 4e-25 Identities = 216/309 (70%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 319363 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 319420 ||||| |||| |||||| || || || || ||| ||| ||||| |||| ||| | Sbjct 1786238 TCGGTCAGGGTGTAGTAGGCCTTGCCC--TCAGGTCGCACCTTGACGAAATCGGCCAGGT 1786295 Query 319421 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 319480 | |||||||| | |||||| ||| ||||| || ||| ||| || || | Sbjct 1786296 TACCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGAGCAATGTCGGTACAGACGG 1786352 Query 319481 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 319540 |||| ||||| |||||||||||||| ||||||| | | | ||| || || | || Sbjct 1786353 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCAACCA 1786412 Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600 |||| || || |||| | ||||| |||| |||||||| || |||||||| || | Sbjct 1786413 GGTAGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCGTCGAGCA 1786472 Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660 |||| | | || |||| |||||| || || || || | || ||||| |||||||||| Sbjct 1786473 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCACCCTC 1786532 Query 319661 CGGAAAGAG 319669 | || |||| Sbjct 1786533 CAGACAGAG 1786541 >seq1 Length=4858313 Score = 120 bits (132), Expect = 6e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||||||||| |||| || ||||||||||| || ||||| || || Sbjct 2148609 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2148550 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAA-CCGCGTGTTGTTCA 319975 ||| || ||||| |||||||| || || || || | || ||| | | || ||||| Sbjct 2148549 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCGAAGCTGGGTTCGGTTCA 2148491 Query 319976 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 2148490 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 2148436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823444311830