Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq5 134 3e-26
seq1 120 6e-22
>seq5
Length=2767003
Score = 134 bits (148), Expect = 3e-26
Identities = 571/891 (64%), Gaps = 21/891 (2%)
Strand=Plus/Plus
Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818
||||| ||||| || | ||| || ||| | |||||||||||||| | ||| ||||||||
Sbjct 1871866 TTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGG 1871925
Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC---TCAAT 229875
||| | ||||| || ||| | ||| | | ||||||| ||||| | ||||
Sbjct 1871926 ACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGG---GAGAACCGGCTCAAC 1871982
Query 229876 GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATT 229935
||||||| || |||||| ||| | || | || || || | ||||||||||||
Sbjct 1871983 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 1872042
Query 229936 GTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994
|||| || || ||| | | | | | | | | | || ||| || ||||| |
Sbjct 1872043 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTGCAGGTCCCCGAGGCCAAGTG 1872101
Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054
|| || | | ||| | | | || ||||| || ||| || | ||||| ||
Sbjct 1872102 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGAT 1872161
Query 230055 CGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACAT 230114
|||| | || ||| | || || | | | || || | ||||| || | |||
Sbjct 1872162 CGACACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 1872221
Query 230115 CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGG--CTAGAAC--CTGGTAAAT 230170
||| | | || ||||| | ||||| | || ||| || || | || |
Sbjct 1872222 CCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGAC 1872281
Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230
| |||| |||||| || |||||| | || || || || | || ||||| |
Sbjct 1872282 C-TTTGGCGAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 1872340
Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290
|| | ||||||| ||||| ||| |||| | ||||| |||||| | || ||||
Sbjct 1872341 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACG 1872400
Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAG 230349
|| ||||| || ||||||||||| || || | | || | | || | | || |
Sbjct 1872401 AGCTCATCTCCCGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCGCAC 1872459
Query 230350 CTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAA 230406
||| ||||| | ||| | | ||| | ||| | | | ||| || || ||||
Sbjct 1872460 CTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGT 1872516
Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466
| ||| |||||||| | |||||| | || || | || | || |||||||| |
Sbjct 1872517 ATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAACGCCAAG 1872576
Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526
|| ||| | |||||||| || || || |||||||| | | ||||| || || ||
Sbjct 1872577 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCC 1872636
Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586
|| || |||||||| | |||||||| | || |||||| ||| ||||| || |||
Sbjct 1872637 AAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAG 1872696
Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||||| ||||| || ||||| |||| | | || || |||
Sbjct 1872697 ACCAACTTCTTCGAGAAGCGGGTGTCCGACTACCAGAAGGCCGGCGTCATG 1872747
Score = 131 bits (144), Expect = 4e-25
Identities = 216/309 (70%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 319363 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 319420
||||| |||| |||||| || || || || ||| ||| ||||| |||| ||| |
Sbjct 1786238 TCGGTCAGGGTGTAGTAGGCCTTGCCC--TCAGGTCGCACCTTGACGAAATCGGCCAGGT 1786295
Query 319421 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 319480
| |||||||| | |||||| ||| ||||| || ||| ||| || || |
Sbjct 1786296 TACCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGAGCAATGTCGGTACAGACGG 1786352
Query 319481 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 319540
|||| ||||| |||||||||||||| ||||||| | | | ||| || || | ||
Sbjct 1786353 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCAACCA 1786412
Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600
|||| || || |||| | ||||| |||| |||||||| || |||||||| || |
Sbjct 1786413 GGTAGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCGTCGAGCA 1786472
Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660
|||| | | || |||| |||||| || || || || | || ||||| ||||||||||
Sbjct 1786473 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCACCCTC 1786532
Query 319661 CGGAAAGAG 319669
| || ||||
Sbjct 1786533 CAGACAGAG 1786541
>seq1
Length=4858313
Score = 120 bits (132), Expect = 6e-22
Identities = 133/175 (76%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916
|||||| || || | ||||||||| |||| || ||||||||||| || ||||| || ||
Sbjct 2148609 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2148550
Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAA-CCGCGTGTTGTTCA 319975
||| || ||||| |||||||| || || || || | || ||| | | || |||||
Sbjct 2148549 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCGAAGCTGGGTTCGGTTCA 2148491
Query 319976 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
| ||||| || |||| || |||||||| || ||||| | |||||||||||| ||
Sbjct 2148490 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 2148436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823444311830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |