Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 194 2e-44 >seq5 Length=2767003 Score = 194 bits (214), Expect = 2e-44 Identities = 573/876 (65%), Gaps = 23/876 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| ||| || || || ||||| ||||| || ||||| | || || || |||||| Sbjct 1872731 TGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCC 1872672 Query 16736 ATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| || || || || || || || | | || |||| || || | | | | Sbjct 1872671 ATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTG--GAGTTGCCGAGAGCAACCAGCA 1872614 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | || || ||||| || || || |||||||| | | | ||||||||| | || | Sbjct 1872613 GACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGTC 1872554 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA--T 16911 || ||||| || |||| || ||||| ||| |||| || || ||| | | Sbjct 1872553 CGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGT 1872494 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 || | | || | || ||| ||| | | || || || | |||||| || || Sbjct 1872493 CCTCGACAATCTT--CTTGGAGGGTCGGTTCTCGAGGTGCGAGAAGAGCAGACAGGCAAA 1872436 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 ||| || | |||||||||| | ||| || ||||| || || || | |||||||| Sbjct 1872435 GTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 1872376 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||||| ||||| | ||| || || | ||||||||| || || ||||| || ||||| Sbjct 1872375 GAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTC 1872316 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTT 17151 ||||| ||||| ||||| | || ||| | | |||| || | || ||||| || Sbjct 1872315 GACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGAGATCCACTT 1872256 Query 17152 CTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----TA 17207 || |||| ||||| || | ||| ||||| || || || ||||| || || || Sbjct 1872255 GAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTA 1872196 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 ||| || ||| |||| | || || || ||||| || || |||| |||| | Sbjct 1872195 GGTTCGCT----CCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTTTCCG 1872140 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| ||||||||||| ||||| || ||||| ||||| ||| || | | || | Sbjct 1872139 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGACCTGCA 1872080 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 | || || ||||||| ||| | || || |||||||| || || ||| || || || | Sbjct 1872079 CCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGCAAAGA 1872020 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG-----CCAGTC 17442 | |||| | ||| ||||| | |||| || ||| || | | |||||| Sbjct 1872019 AGGCCAGCACGTGCGAGATGAAGAACCGCTCGT-CGTTGT-TGAGCCGGTTCTCCCAGTC 1871962 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 | || ||| | ||| | || |||| |||||| ||| |||| | ||||| || Sbjct 1871961 GCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTT 1871902 Query 17503 ATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || || | ||| || |||||||| Sbjct 1871901 GTACATCTGCCAGATCTCGTGGTACTGGATGGGGAA 1871866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545334757880