Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq1 87.8 2e-12 >seq2 Length=4160336 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | |||| |||||||||||| || ||||| ||||| | Sbjct 1736794 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1736853 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || ||||||| ||||| ||||| || |||| |||| |||||||||| ||| Sbjct 1736854 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 1736913 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | || || | |||| Sbjct 1736914 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 1736973 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 || | ||| ||||||||||| || | || |||||||| ||||||| Sbjct 1736974 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | |||||||||||| || ||||| ||||| | Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||| ||||| || || || | ||||||| |||||||||| ||| Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| || || | |||| Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1074870 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177 || | ||| || ||||| ||||| | || |||||||| || ||||||| Sbjct 1074869 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821 >seq1 Length=4858313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGG 23868 ||||| || ||||| || ||||||||||| | | || ||| || ||||| ||| | Sbjct 2020385 ACGTTTCCGAGGTCACCAACGTGTCGCTCGGAGTCGGTGGGGGCACCGTGGTTCTTCTTG 2020444 Query 23869 GTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 |||||| ||||| |||||| || |||||||||||| || |||| || || ||||| Sbjct 2020445 AAGGGGTTGAAGTGGGGGCCAGCAGAAGTGCAGCCGTTGGTGTTGTCACCAAACTCGTGG 2020504 Query 23929 ACGTGAAAACC 23939 ||||| || || Sbjct 2020505 ACGTGGAATCC 2020515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258989002356