Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5 522 3e-143
seq2 141 1e-28
seq1 140 3e-28
>seq5
Length=2767003
Score = 522 bits (578), Expect = 3e-143
Identities = 642/865 (74%), Gaps = 19/865 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||||||||| ||||||| ||||||||| ||| | |||||||| || |||| ||
Sbjct 1871827 GAGCCGCTGCTCAAGGAGAACCACCGCCGGTTTGTGCTCTTCCCCATCCAGTACCACGAG 1871886
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||
Sbjct 1871887 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTC 1871946
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||||||| || | ||| || ||||||| |||||| |
Sbjct 1871947 GGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCTCG 1872006
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|||||||||||||| || || || ||| || || || |||||||| ||||| |||||
Sbjct 1872007 CACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATTGTGAACGAGAACCTGGTGGAGCGA 1872066
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | ||||||||||| ||||||| ||||||||||||||| |||||| |||
Sbjct 1872067 TTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 1872126
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929
|||||| | |||||||||| ||| ||| || |||||||| ||| | | | | |
Sbjct 1872127 GAGAACATCCACTCGGAAACGTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAG 1872186
Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
||| ||| || | | ||| |||||||||||||| || || ||| |||| ||||||||
Sbjct 1872187 GAGC-GAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCC 1872243
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049
|| |||||||| |||||| ||| | ||| | |||| |||||||| ||| | |||
Sbjct 1872244 GACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGACCTTTGGCGAGCGGCTGATCGCC 1872303
Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109
|| || |||||||||||| ||||||| || ||| |||||| |||| || |||||||||
Sbjct 1872304 TTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTCTGGCTCAAG 1872363
Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169
|| || || |||||||||||||| || ||| |||||||||||||||| | |||||||||
Sbjct 1872364 AAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGT 1872423
Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229
||||| ||||||||||||| |||| ||| ||| | | | | ||||| | | |
Sbjct 1872424 CTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAACCGACCCTCCAAGAAG 1872483
Query 117230 CGCGTC-AGG--GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286
||| ||| | ||| || ||| || || | ||||||||| ||||| |||||
Sbjct 1872484 ATTGTCGAGGACGTGATTGT---CGAGGCCGTTGGTATCGAGCAGGAGTTCCTGACCGAC 1872540
Query 117287 GCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344
|| ||||| ||| | ||||| ||| | || || || | |||| || ||||| ||||
Sbjct 1872541 GCTCTGCC-CTGCGGACTGCTCGGAATGAA-CGCCAAGCTCATGTGCCAGTACATTGAGT 1872598
Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404
| ||||||||| | |||||| | | || | | | ||||| ||||||| | ||||||
Sbjct 1872599 TTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCCAAGGTCTACAACTCCACCAACC 1872658
Query 117405 CGCTGGACTTTATGAACCTCATCTC 117429
| | ||||| ||| | ||||||
Sbjct 1872659 CCTTCGACTTCATGGAGAACATCTC 1872683
>seq2
Length=4160336
Score = 141 bits (156), Expect = 1e-28
Identities = 162/215 (75%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750
||||||| || || || || || || ||||| ||||||||| |||| || || | |||
Sbjct 1737019 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 1736960
Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||||||
Sbjct 1736959 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1736901
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| || | ||| ||||| ||||| || |||| || || || |||||||||
Sbjct 1736900 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 1736841
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| |||| ||||| || || ||||
Sbjct 1736840 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCG 1736806
Score = 129 bits (142), Expect = 6e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || || || || || || || || || || |||||| | || || || |
Sbjct 1074821 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 1074880
Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | |||| ||||| || || | ||||| ||||| || ||| |||||
Sbjct 1074881 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1074939
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||||
Sbjct 1074940 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1074999
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||| |||| || ||||| || ||||
Sbjct 1075000 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1075037
>seq1
Length=4858313
Score = 140 bits (154), Expect = 3e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || ||||||||| |||| ||||| | |
Sbjct 3612723 ATGCAGATTTTCGTGAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCT 3612664
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| ||||| |||||| |||||||
Sbjct 3612663 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 3612605
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| ||| || || ||||| || |||| || |||||| |||||||||
Sbjct 3612604 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAA 3612545
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||||||||||| |||| || || || |||
Sbjct 3612544 CATCCAGAAGGAATCCACTCTCCACCTTGTG 3612514
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||||||| |||| || || || ||
Sbjct 3612951 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCC 3612892
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || |||| ||||| ||||| || ||| |||||||
Sbjct 3612891 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 3612833
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| ||| || || ||||| || |||| || || || |||||||||
Sbjct 3612832 GCAGCGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAA 3612773
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 3612772 CATCCAGAAGGAGTCTACTCTCCATCTGGT 3612743
Score = 131 bits (144), Expect = 2e-25
Identities = 151/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || |||||||| |||| || || || ||
Sbjct 3613390 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 3613331
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || || | ||||| |||||||| ||| |||||||
Sbjct 3613330 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 3613272
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||||||| | ||| || || ||||| || || | || |||||| ||||||||
Sbjct 3613271 GCAGCGACTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTACAA 3613212
Query 40869 CATCCAGAAGGAGGCCACGCT 40889
||||||||||||| | || ||
Sbjct 3613211 CATCCAGAAGGAGTCTACTCT 3613191
Score = 109 bits (120), Expect = 6e-19
Identities = 123/162 (76%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 40738 GTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796
||||| || |||||| | | | |||| ||||| || |||| ||||| ||||| ||
Sbjct 3613570 GTCGAGTCCTCCGACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAAT 3613512
Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
||| |||||||||| |||||||| | ||| || || ||||| || |||| || || ||
Sbjct 3613511 TCCCCCGGACCAGCAGCGACTCATTTTCGCCGGTAAGCAGCTCGAGGACGGACGAACTCT 3613452
Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||||||||||| | || || ||||| ||
Sbjct 3613451 GTCCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGT 3613410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218935950160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |