Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 >seq6 Length=2636511 Score = 136 bits (150), Expect = 3e-27 Identities = 408/627 (65%), Gaps = 27/627 (4%) Strand=Plus/Plus Query 97020 GGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATC 97079 ||||||||| | || ||||| | ||||| || | ||||| | || | ||||| || Sbjct 2518908 GGGAGTTCGGGAAATCTGCTGCTTCAGAGCGTCCACGTGATCCTTGTACACATGAGCGTC 2518967 Query 97080 TCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGT 97139 ||| | || || |||| |||||| | | ||| || || ||||| ||||| | ||| Sbjct 2518968 TCCCATGGTATGGATAAGCTCTCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGT 2519027 Query 97140 TAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTG 97199 || |||| |||| |||||||| || || || || || |||| |||| ||| | || Sbjct 2519028 CAACAGAGCATAGGAGGCAATGTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTG 2519087 Query 97200 ATATAACTGACAGGAAAGCTTTCCA----------TC----AC-ACACATAAAACTGACT 97244 || | |||||| || ||| ||| || || |||| || ||||| | Sbjct 2519088 GTACAGCTGACACGACAGCCGTCCTCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCA 2519147 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || | || ||||| || | |||||||| | | || | ||||| || ||| Sbjct 2519148 GAACATGTGGCAGGGAGGAAGAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAG 2519207 Query 97305 CAACATTCTTCTATC-----GGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAAT 97359 | |||| | || |||||| |||| | || ||| || | ||| || | Sbjct 2519208 AATGATTCGACGGTCCTGAGGGTTGGTTTTGAGAGTGTGG-----ATCACCTGTTTGAGC 2519262 Query 97360 TGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAATG 97418 ||||| || || | ||| |||| |||| | ||||| ||||| ||||||||||| Sbjct 2519263 TGATCCACACCCTGGCCAGTGTAATCTGTGTCACAATCCTTG-TATTCGGCTCCAAAATG 2519321 Query 97419 CCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAG 97478 | ||||||||| ||||| |||||||| |||||||| || ||||| | || ||| Sbjct 2519322 ACGCCATTGGAAGCCATATACAGGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGC 2519381 Query 97479 CTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAG 97538 ||| || | | | | | ||||||||| | |||||||| || | | | || Sbjct 2519382 CTTTTCCAGAAACTCCTTGGATCCATTTCCGTCCCAAATATGAATGTTTTTTTCGCTCAG 2519441 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 || |||| ||| ||| |||| | |||||| | | ||| |||| ||| |||| | Sbjct 2519442 CTTCTTGCCGTCGGTACATCCGGCCACAAACCAGAGAAGTTCCTCCAAAACGCCTCGGTA 2519501 Query 97599 AAATACTCTCTTAGTTGTTAAGAGAGG 97625 ||| || | ||| || || || || || Sbjct 2519502 AAAGACCCGCTTTGTGGTCAACAGGGG 2519528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783826716370