Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 107 4e-18 >seq2 Length=4160336 Score = 107 bits (118), Expect = 4e-18 Identities = 1069/1729 (62%), Gaps = 70/1729 (4%) Strand=Plus/Plus Query 248426 TCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCA 248485 ||| |||||| ||||| ||||| || ||| | ||||||||||| | || || |||| Sbjct 4109914 TCATCAAGCGAGACGGCCGCAAGGAGTCCGTCCAGGTCGACAAAATCACCGCTCGAATCA 4109973 Query 248486 AGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAG 248545 || || ||||| || || || ||| || ||| || | | ||| ||| || Sbjct 4109974 AGCGTCTGTGTTACGGCCTTGATCCCGACCACGTGGACCCCATCCAGATCACCCTCAAGA 4110033 Query 248546 TTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGA 248605 || || ||| ||||| ||||| | || | || || |||| | | ||||| |||| Sbjct 4110034 TTGCGTCTGGCATCTACGAGGGAGTGAGCACCATTGAGCTCGACAACCTGGCTGCCGAGA 4110093 Query 248606 CGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCG 248665 | ||||| |||||| | | | ||||||||||| || | ||||| | | ||||||| Sbjct 4110094 CCGCGGCCTACATGACCACTCTGCACCCCGACTATGCGATTCTGGCTGCCCGAATCGCCG 4110153 Query 248666 TCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTC------GTCGAA-ACCATGGCTGAC 248718 | || | || ||||| | || || || ||| || | || || || | Sbjct 4110154 TGTCCAACCTGCACAAGCAGACCAAGAAGCAGTTTTCACAGGTGGTCTACGATCTCTACC 4110213 Query 248719 -CTACATG---CCT----ATGGGATGG--TCGCCGATGACGTCCA-------------CA 248755 |||| || ||| | || | ||||| ||| ||||| || Sbjct 4110214 ACTACGTGAACCCTCGCAACAAGAAGCACTCGCCCATGGTGTCCAAGGAGCTATACGACA 4110273 Query 248756 CCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGG 248815 |||| ||| | |||||| || || ||||||| ||| ||||| | ||| || Sbjct 4110274 CCGT---TCAAGCGAACGCGGACGAGCTCAACGGCGCCATTCTCTACGACCGAGACTTCA 4110330 Query 248816 AGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCA 248875 ||| | | ||||| ||||| || |||||| | | || || || | | | ||| Sbjct 4110331 CCTACAACTACTTTGGCTTCAAGACCCTGGAGCGAGCCTACCTGCTGCGAGTCAACGGCG 4110390 Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935 | | || ||| ||||| ||| | ||||||||| ||||||| || ||| || Sbjct 4110391 CTGTTGCCGAGCGACCCCAGCAGATGATCATGCGAGTGTCTGTCGGTATCCACGGCGACA 4110450 Query 248936 ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 |||| | | | | ||||| |||| | ||| | | | | || || || Sbjct 4110451 ACATTGCCCGAGCCATTGAGACCTACAACTACATGTCTCAGAAGTACTTCACCCACGCTT 4110510 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | || || || | |||||| || ||| | | ||| || ||||| || ||| | Sbjct 4110511 CCCCTACCCTGTACAACGCAGGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCA 4110570 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGA 249112 |||| | |||||||| |||||||||| || ||||| || || ||| || | Sbjct 4110571 ACATGAAGGACGACTCCATCGACGGCATCTACGACACCCTCAA---GACTTGTGCTCTCA 4110627 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || | ||| || || || ||||| ||| || |||||||||||| | || || | Sbjct 4110628 TCTCCAAGTCCGCTGGAGGTATTGGTCTGTCCATCCACAACATCCGAGCCACCGGATCCT 4110687 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 |||| || || || || | | |||||||| ||| | || || || | Sbjct 4110688 ACATTGCCGGAACCAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACA 4110747 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATT 249289 |||||| | | | || |||||| || | ||| || | || |||||||| Sbjct 4110748 ACACCGCTCGATACGTCGACCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACC 4110807 Query 249290 TGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG 249349 |||| ||||||| || | || |||||| || || ||||||| |||| || | Sbjct 4110808 TGGAGCCCTGGCACGATGACGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTAAGG 4110867 Query 249350 AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCC 249409 || || |||| || || || ||| | || ||| || ||||| |||||||| | Sbjct 4110868 AGGAGATCCGAGCCCGAGATCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGGAGC 4110927 Query 249410 GCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCG 249469 | ||| || ||| ||| ||||| || | | || ||| ||| | |||| | Sbjct 4110928 GAGTCGAGCAGAACGCCGAGTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTCGATG 4110987 Query 249470 ATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCA----TC 249525 | | |||| | ||| ||| | || || || | ||||| | ||| || Sbjct 4110988 ACGTCTACGGTGACGAGTTCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGTC 4111047 Query 249526 GGCAAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACA 249585 | | | || ||| || | || || | | | |||| | ||||| ||| | Sbjct 4111048 GACGA-ACCATCCCTGCCCAGAAGCTGTGGTACCACATTCTGGACTGCCAGACCGAGTCC 4111106 Query 249586 GGGGGGCCGTATTATT-TGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCT 249644 || || | | || | | ||| ||||| |||||| ||| |||||| | | || Sbjct 4111107 GGTAACCCCT-TCATGCTCTACAAGGACGCCTGCAACCGAAAGTCCAACCAAAAGAACCT 4111165 Query 249645 TGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGA 249704 ||||||||| || || || || ||| ||| | | | ||||| || || || Sbjct 4111166 GGGTACCATCAAGTCTTCCAACCTGTGTTGCGAGATTGTCGAGTACTCTTCTCCTGATGA 4111225 Query 249705 GATTGCCGTCTGCAACCTGGCAAGCATCAATCT-----CGTGAGGCACGTGAGGGCGGAC 249759 | | || |||||||||||||| |||| ||| | | | ||| ||| ||| Sbjct 4111226 GGTCGCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACCTTTGTCACTCGAGACGAGAC 4111285 Query 249760 -AGGACGTTC---GACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGATCAA---AAA 249812 | | ||| |||||| || || ||| | || || || ||| ||| Sbjct 4111286 CAACTCCTTCTACGACTTCAAGAAGCTGCACGATATTGCCAA---GGTGATTGTGCGAAA 4111342 Query 249813 CCTCAACAAGGTGATTGATGTCAATTTTTACCC---CCTTGAGGAATGCAGGTTGTCCAA 249869 ||||||| | ||||| || | ||||| || ||||| || | |||||| Sbjct 4111343 CCTCAACGCCATCATTGACCGAAACTACTACCCTGTCCCTGAGGC---CAAGAAGTCCAA 4111399 Query 249870 CATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGAT 249929 |||| ||||| || || ||||| || |||| ||| || || ||||| | Sbjct 4111400 CATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCTGATACCTTCATGGCCCT 4111459 Query 249930 GGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGAGACCAT 249989 || | ||||||||||| |||||||| || ||| || | ||||| ||||||||||| Sbjct 4111460 CCGACTGCCCTTCGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGAGACCAT 4111519 Query 249990 CTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATACGAGAG 250049 ||| ||||| ||| ||||| || ||| | |||| ||||| | ||||||| Sbjct 4111520 CTACCACGGTGCCGTTGAGGCTTCTTACGAGATGGCCCTTGAGGACGGTGCTTACGAGAC 4111579 Query 250050 TTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098 || ||||| || || || || || | || |||||||| || ||| Sbjct 4111580 CTTCCAGGGCTCTCCTGCCTCCAAGGGTGACCTGCAGTTTGACCTGTGG 4111628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765835937088