Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 196 6e-45 seq3 105 8e-18 >seq5 Length=2767003 Score = 196 bits (216), Expect = 6e-45 Identities = 401/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || ||| ||||||||||||||||| || | ||||| || || || Sbjct 1872447 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGT 1872388 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| || Sbjct 1872387 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAA 1872328 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTC 33754 |||||| || || || || |||||||| || || | ||| ||| | || || ||| Sbjct 1872327 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTC 1872268 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 1872267 GGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || || || ||| || || || || || | || || ||||||| || || Sbjct 1872207 GTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 1872148 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | ||||||| || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 1872147 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 1872088 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | |||||| || | ||||| || | | || || ||||| || ||||| || Sbjct 1872087 GACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGC 1872028 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 34050 ||||| || |||| || || || || | ||||| | |||| | || | Sbjct 1872027 AGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCGGTTCT 1871969 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 1871968 CCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 1871909 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| || ||||| | |||||| || || || ||||| ||||| | ||||| Sbjct 1871908 CCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857 >seq3 Length=2943663 Score = 105 bits (116), Expect = 8e-18 Identities = 431/663 (65%), Gaps = 26/663 (4%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAAT 63292 ||||| | ||| ||||||| | || | || ||| || || ||||| || || || || | Sbjct 1832170 GGACAGAACAAGGACCACTTTTCGCC-TCTTTCGACCCGCTTCATGAACAGGTCCGGCAC 1832228 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| | || || || ||||||| ||| | ||||| ||| || || || Sbjct 1832229 CCACAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCAG 1832288 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 | ||||| | | |||||| | |||||| || |||| || ||||| | |||| || Sbjct 1832289 GTTCAGGAAATCGAGAATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGG 1832348 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||||||| ||||| || | || | |||||||| || | || || | ||| || Sbjct 1832349 ACGCTTGTTTCCACCCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGGG 1832408 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATAT 63531 || ||| || | || | || | | || | || ||||| || |||| | |||| Sbjct 1832409 AACAATGCCACTGGACCTTCCTTGAGACCCAGTAATGATAGCACCCT-TGGCCCTGATAT 1832467 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT-CGTTTTAAC 63590 || ||| ||||| || || || ||| |||| |||||| |||||| ||| || | Sbjct 1832468 TATGAATATGCAGACCGATACCTCCAGCCGTTTTCGAGATT--TGCGCACACGTCTTGAG 1832525 Query 63591 G-TGTCATAGATGCCTTCTATGCTATCATCGAT--CATGTTAAGTAGAAAACAGCTAGAC 63647 | | || ||||| || || ||| || ||| ||| | ||||||||| ||| Sbjct 1832526 GGTATCGTAGATTCCGTCGATGGAGTCG--GATGCCATAGCCACCAGAAAACAGGACGAC 1832583 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 | ||| | | ||| || ||||| || | || ||||||||||| || || ||| Sbjct 1832584 AGTTGTCCCTGGGGAGTACCGGCATTGAAAAGCGTGGGAGAAGCGTGTGTGAA----TTT 1832639 Query 63708 TCAGAAAG-TAGA---TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || || | ||| ||||||| || | | | | ||||| | ||| || || Sbjct 1832640 TCTGAGCGACAGAGCCGTGTACGTTTCCAGCACCTTGGCGATATCGTCTCCATGGATCCC 1832699 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT--TTTGT-TGTTTATTTT 63820 | || || ||||| | ||| || ||||| | |||||| || || | | || || Sbjct 1832700 CAGAGCCACGCGCATGAGCATATGTTGAGGACGTTCAACTATACTTCCTCCGGTTCTT-- 1832757 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | |||||| || ||||||| || || || ||||| || ||| || | ||||| || Sbjct 1832758 -AGCAAGTACGACTTTTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGAGAGGTCTCTGTC 1832816 Query 63881 GTA 63883 ||| Sbjct 1832817 GTA 1832819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817277218480