Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5 196 6e-45
seq3 105 8e-18
>seq5
Length=2767003
Score = 196 bits (216), Expect = 6e-45
Identities = 401/592 (68%), Gaps = 8/592 (1%)
Strand=Plus/Minus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|| ||| || || ||| ||||||||||||||||| || | ||||| || || ||
Sbjct 1872447 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGT 1872388
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
||| |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| ||
Sbjct 1872387 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAA 1872328
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTC 33754
|||||| || || || || |||||||| || || | ||| ||| | || || |||
Sbjct 1872327 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTC 1872268
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|||||||| | ||||| ||||||||||| || | || || || || || |||||
Sbjct 1872267 GGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| || || ||| || || || || || | || || ||||||| || ||
Sbjct 1872207 GTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 1872148
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
| ||||||| || ||||| || || ||||| || |||||||| || | |||||||
Sbjct 1872147 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 1872088
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
| |||||| || | ||||| || | | || || ||||| || ||||| ||
Sbjct 1872087 GACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGC 1872028
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 34050
||||| || |||| || || || || | ||||| | |||| | || |
Sbjct 1872027 AGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCGGTTCT 1871969
Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110
||| || || || || | ||| | || || | ||||| || || ||||| |
Sbjct 1871968 CCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 1871909
Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
|||| || ||||| | |||||| || || || ||||| ||||| | |||||
Sbjct 1871908 CCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857
>seq3
Length=2943663
Score = 105 bits (116), Expect = 8e-18
Identities = 431/663 (65%), Gaps = 26/663 (4%)
Strand=Plus/Plus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAAT 63292
||||| | ||| ||||||| | || | || ||| || || ||||| || || || || |
Sbjct 1832170 GGACAGAACAAGGACCACTTTTCGCC-TCTTTCGACCCGCTTCATGAACAGGTCCGGCAC 1832228
Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352
||| | || || || ||||||| ||| | ||||| ||| || || ||
Sbjct 1832229 CCACAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCAG 1832288
Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412
| ||||| | | |||||| | |||||| || |||| || ||||| | |||| ||
Sbjct 1832289 GTTCAGGAAATCGAGAATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGG 1832348
Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472
|| |||||||| ||||| || | || | |||||||| || | || || | ||| ||
Sbjct 1832349 ACGCTTGTTTCCACCCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGGG 1832408
Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATAT 63531
|| ||| || | || | || | | || | || ||||| || |||| | ||||
Sbjct 1832409 AACAATGCCACTGGACCTTCCTTGAGACCCAGTAATGATAGCACCCT-TGGCCCTGATAT 1832467
Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT-CGTTTTAAC 63590
|| ||| ||||| || || || ||| |||| |||||| |||||| ||| || |
Sbjct 1832468 TATGAATATGCAGACCGATACCTCCAGCCGTTTTCGAGATT--TGCGCACACGTCTTGAG 1832525
Query 63591 G-TGTCATAGATGCCTTCTATGCTATCATCGAT--CATGTTAAGTAGAAAACAGCTAGAC 63647
| | || ||||| || || ||| || ||| ||| | ||||||||| |||
Sbjct 1832526 GGTATCGTAGATTCCGTCGATGGAGTCG--GATGCCATAGCCACCAGAAAACAGGACGAC 1832583
Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707
| ||| | | ||| || ||||| || | || ||||||||||| || || |||
Sbjct 1832584 AGTTGTCCCTGGGGAGTACCGGCATTGAAAAGCGTGGGAGAAGCGTGTGTGAA----TTT 1832639
Query 63708 TCAGAAAG-TAGA---TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763
|| || | ||| ||||||| || | | | | ||||| | ||| || ||
Sbjct 1832640 TCTGAGCGACAGAGCCGTGTACGTTTCCAGCACCTTGGCGATATCGTCTCCATGGATCCC 1832699
Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT--TTTGT-TGTTTATTTT 63820
| || || ||||| | ||| || ||||| | |||||| || || | | || ||
Sbjct 1832700 CAGAGCCACGCGCATGAGCATATGTTGAGGACGTTCAACTATACTTCCTCCGGTTCTT-- 1832757
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
| |||||| || ||||||| || || || ||||| || ||| || | ||||| ||
Sbjct 1832758 -AGCAAGTACGACTTTTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGAGAGGTCTCTGTC 1832816
Query 63881 GTA 63883
|||
Sbjct 1832817 GTA 1832819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817277218480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |