Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 1e-20
>seq5
Length=2767003
Score = 114 bits (126), Expect = 1e-20
Identities = 362/554 (65%), Gaps = 13/554 (2%)
Strand=Plus/Minus
Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718
||| ||||| || || || ||||| |||| || || ||||| || || || |
Sbjct 1872444 ACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1872385
Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778
|| ||||| | ||||| || || | ||| || || | ||||| || ||||| |||||
Sbjct 1872384 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAA 1872325
Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838
|| ||||| || || ||||| || || || || || ||||| | | | | || ||
Sbjct 1872324 GATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGA 1872265
Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||| || ||||| || | || || || || | || || ||||| || ||
Sbjct 1872264 GATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 1872205
Query 13899 GAATAAAT--GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 13955
||| | | |||| || | || ||||| ||||||| || || || | || | ||
Sbjct 1872204 GAACAGGTAGGTTCGCTCCTTGGGGTCCTTGA--TGTATGTGTCGATCAGCA-GCGAGTA 1872148
Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14014
| |||| ||||| ||||| || || ||||| || || || || || | || || |
Sbjct 1872147 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 1872088
Query 14015 -ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073
||| || ||||| | | |||| || ||| ||| || || ||||||||||| |
Sbjct 1872087 GACC--TGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAA 1872030
Query 14074 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTT 14130
|| ||||| || |||| | || || ||| | |||| || ||||||| | ||
Sbjct 1872029 GCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTC 1871970
Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190
| ||| ||| | | ||||| ||||| | || || | ||||| ||| ||| |
Sbjct 1871969 TCCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCG 1871910
Query 14191 GCTTTTTTATACAT 14204
|| || || |||||
Sbjct 1871909 GCCTTCTTGTACAT 1871896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588554723240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |