Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 307 2e-78 seq3 140 5e-28 >seq5 Length=2767003 Score = 307 bits (340), Expect = 2e-78 Identities = 594/871 (68%), Gaps = 29/871 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||||| ||||| |||| || || Sbjct 1871863 CTCTTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTC 1871922 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||| | ||||| ||||||| || ||| ||||||| || | | Sbjct 1871923 TGGACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAAC 1871982 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||| || || |||||| | ||||||||||||| | |||||||| || Sbjct 1871983 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 1872042 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||||| || ||| || |||||||| ||| || | || |||| |||| Sbjct 1872043 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGC 1872102 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| |||||||| |||||| | |||||||||| |||||| ||||| Sbjct 1872103 TTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGATC 1872162 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| ||||| || || ||| | || | | | || ||||| ||||| || | Sbjct 1872163 GACACATACATCAAGGACCC-CAAGGAGCGAACCTACCTGTTCAACGCCATCGAGACCAT 1872221 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | || || ||||| | |||| | | ||||||| |||||| |||| | Sbjct 1872222 CCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGAC 1872281 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | | ||| | ||| | || || |||||||| |||||||||||||| || || || Sbjct 1872282 CTTTGGCGAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 1872341 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 || ||||||| |||||||||||||| || ||||||||||| || || | ||||| Sbjct 1872342 CGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGA 1872401 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 | | || || ||||||||||| || ||| ||||||||| ||| || || ||||| || Sbjct 1872402 GCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCT 1872461 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAAC---ATTGTAACCGATG 125649 |||| | || || | | | | ||| || ||||| ||| | Sbjct 1872462 ----------CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTGATTGT---CGAGG 1872508 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 |||| | || || || ||||| || ||||| | || || | | || | || |||| Sbjct 1872509 CCGTTGGTATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGA 1872568 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || |||||| |||||| ||||||| |||||||| || || ||||| ||| |||| Sbjct 1872569 ACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTG-----GTTGC 1872623 Query 125770 T-TGG----CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATC 125824 | | | | |||| | |||||| ||| || ||||| || |||||| | ||| || Sbjct 1872624 TCTCGGCAACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTC 1872683 Query 125825 ACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || | || ||||||||||| ||||||||| Sbjct 1872684 GCTGGCCGGCAAGACCAACTTCTTCGAGAAG 1872714 >seq3 Length=2943663 Score = 140 bits (154), Expect = 5e-28 Identities = 378/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 |||||||| | || || |||||||| ||| ||| | |||| || || |||| Sbjct 1832422 CCAGTGGCATTGTTCCCATGCTCAGGGTGTTCAACAACACCGCACGGTATGTCGACCAGG 1832363 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | || || || || || || || | ||| |||| |||| || ||||| || || || Sbjct 1832362 GTGGAAACAAGCGTCCCGGAGCGTTTGCCATCTATCTGGAGCCCTGGCATGCCGATATTC 1832303 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 | || || | | |||| |||||| || || ||| |||| || ||| ||| Sbjct 1832302 TCGATTTCCTGAACCTGCGGAAAAACCACGGAGCAGAGGAGAACAGAGCAAGAGACCTGT 1832243 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC-AACGACGGTGGCTACTGG 97058 | || ||| | |||||||| || ||||||||||||| ||| || || || | | ||| Sbjct 1832242 TCTACGCATTGTGGGTGCCGGACCTGTTCATGAAGCGGGTCGAAAGA-GGCGAAAAGTGG 1832184 Query 97059 AGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 | | | || || | | | || || ||| || ||||| ||||||||| Sbjct 1832183 TCCTTGTTCTGTCCAAAGAAGGCCCCTGGGCTGGAAGACGTGTGGGGACCTGAGTTTGAG 1832124 Query 97119 GCCAAGTACACGGCCTACGAGCAAGAGGGCCGAT---ACGTG-AGACGAGTCGATGCACG 97174 || ||| || |||||| || ||||| | ||| | ||| || | || | Sbjct 1832123 CAGAAATACGAGGAGTACGAGAAAAAGGGCTTGTTCAACGCGCAGA----TCAACGCGCA 1832068 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 || |||| ||||| ||| | ||| |||| | || || ||| |||| ||| ||||| Sbjct 1832067 GGAGCTGTTCAAGGCGATCCTCACGAGTCAGATCGAAACCGGAGGACCGTTCATGCTCTA 1832008 Query 97235 CAAGGATACCGTGAATCGCAACAG--CAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||| | | || | ||||| || |||||| | || |||||||||||||| || Sbjct 1832007 CAAGGACAGC-TGCAACGCAA-AGTCCAACCAGCAGAACCTGGGCACCATCAAGTCGTCG 1831950 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 ||||||||||||||||| || ||||| | || || || ||| ||| || ||| ||| Sbjct 1831949 AATCTGTGCACGGAAATCGTCCAGTACTCGTCACCCGAAGAGGTGGCGGTGTGCAACCTG 1831890 Query 97353 GCATCGGTCAATCTGCCCAAGTTTGTAGAG 97382 || || || | |||| ||||||| ||| Sbjct 1831889 GCGTCTGTAGCTTTGCCTGAGTTTGTCGAG 1831860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058820207160