Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq3 87.8 1e-12 >seq6 Length=2636511 Score = 136 bits (150), Expect = 3e-27 Identities = 332/499 (67%), Gaps = 28/499 (6%) Strand=Plus/Plus Query 25421 CTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTC 25480 |||||| | || ||||||||| ||| || ||||||||||||| || |||| || ||| Sbjct 2518929 CTTCAGAGCGTCCACGTGATCCTTGTACACATGAGCGTCTCCCATGGTATGGATAAGCTC 2518988 Query 25481 TCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGAT 25540 ||| || || |||| || | || ||||| || | ||| ||| ||| || Sbjct 2518989 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 2519048 Query 25541 GTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 25600 ||| ||||| || || | |||| | | | |||| |||||| ||||||||||| ||| Sbjct 2519049 GTTGAAGGGAACACCCAGACCCA-GATCACATGACCGCTGGTACAGCTGACACGACAGC- 2519106 Query 25601 CTTCGTCGCT----------------CACGTAAAACTGACACATGGTGTAGCACGGAGGA 25644 | || ||||| |||||| ||||| || | ||| ||| |||||| Sbjct 2519107 CGTCCTCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGA 2519166 Query 25645 AGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCT 25704 ||||| || | || ||| ||||||||||| ||| ||||| | | ||| | Sbjct 2519167 AGAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGA 2519226 Query 25705 GGGTTGTCCCTGATA----AGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGA 25760 |||||| ||| | |||| | ||||| ||||||||||| ||| || | Sbjct 2519227 GGGTTGGTTTTGAGAGTGTGGATCACC--TGTTT--GAGCTGATCCACACCCTGGCCAGT 2519282 Query 25761 GTAGTCTGCCCTCA-TGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACA 25819 ||| |||| ||| ||| |||| || ||||| |||| | ||| ||||| || || | Sbjct 2519283 GTAATCTG-TGTCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATA 2519341 Query 25820 CCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGG 25879 | ||||| |||||||| || || || | || || ||| |||| ||| || ||| Sbjct 2519342 CAGGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGG 2519401 Query 25880 AACCATTGGCGTCCCAGAT 25898 | ||||| ||||||| || Sbjct 2519402 ATCCATTTCCGTCCCAAAT 2519420 >seq3 Length=2943663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 44367 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 44426 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| ||| Sbjct 394723 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 394782 Query 44427 -TCACGGCGCAAAAGGGGACA--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTT-- 44481 |||||| || ||||| || || | | ||| | ||| | ||||| ||||| || Sbjct 394783 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGACAC--GAGGATATGCCGTTTT 394839 Query 44482 CGACAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 44541 || | | || | |||||||| |||||||||||||||||||| ||||||| | || Sbjct 394840 CGGCCGAG--GGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 394897 Query 44542 GACCGT 44547 |||||| Sbjct 394898 GACCGT 394903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137430037493