Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-30 seq6 120 5e-23 >seq2 Length=4160336 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | ||||||||||| || || ||||||||||| |||| Sbjct 3496760 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATTCAGGGTATCACCAAGCCCGCTA 3496702 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 3496701 TCCGACGTCTTGCACGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 3496642 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| || | || |||| ||||| | ||| || | Sbjct 3496641 CCCGAAACGTTCTCAAGTCCTTCCTCGAGTCTGTCATCCGAGATGCCGTGACCTACACTG 3496582 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| ||||||| || | || || || | Sbjct 3496581 AGCACGCCAAGCGAAAGACTGTCACTTCTCTCGATGTCGTCTACGCCCTCAAGCGACAGG 3496522 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||| ||||| || ||||| Sbjct 3496521 GCCGAACCCTTTACGGTTTCGGTGGTTAA 3496493 >seq6 Length=2636511 Score = 120 bits (132), Expect = 5e-23 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| ||||||||||||||| || || ||||| ||||| || | Sbjct 2448745 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATTCAGGGTATCACTAAGCCCGCCA 2448687 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || || || || ||||| | || | | |||| || |||| Sbjct 2448686 TCCGACGTCTTGCGCGACGAGGAGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 2448627 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||| || | || |||| || || | ||| |||| Sbjct 2448626 CCCGAAACGTGCTCAAGTCGTTCCTGGAGTCTGTCATCCGAGACGCCGTGACCTACACCG 2448567 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| || |||| | ||||| || | || || || | Sbjct 2448566 AGCACGCCAAGCGAAAGACGGTCACTTCTCTGGACGTTGTCTACGCTCTCAAGCGACAGG 2448507 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | | || ||||| ||| |||||| Sbjct 2448506 GCCGAACCCTCTACGGTTTCGGAGGTTAAT 2448477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075162513413