Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 196 6e-45 seq3 105 8e-18 >seq5 Length=2767003 Score = 196 bits (216), Expect = 6e-45 Identities = 401/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || ||| ||||||||||||||||| || || |||||||| || || Sbjct 1872447 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGT 1872388 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| |||||||| || || ||||| || ||||| || ||||| ||||| || || || || Sbjct 1872387 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAA 1872328 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTC 33476 |||||| || || || || |||||||| || || | ||| ||| | || || ||| Sbjct 1872327 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTC 1872268 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 1872267 GGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || || || ||| || || || || || | || || ||||||| || || Sbjct 1872207 GTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 1872148 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 | ||||||| || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 1872147 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 1872088 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || || | ||||| ||| ||| || || ||||| || || || || Sbjct 1872087 GACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGC 1872028 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 33772 ||||| || |||| || || || || | ||||| | |||| | || | Sbjct 1872027 AGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCGGTTCT 1871969 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 1871968 CCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 1871909 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||| || ||||| | |||||| || | || ||||| ||||| | ||||| Sbjct 1871908 CCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857 >seq3 Length=2943663 Score = 105 bits (116), Expect = 8e-18 Identities = 460/709 (65%), Gaps = 28/709 (4%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAACGA 63196 || ||||| |||||| || | |||| ||||| | ||| | ||||| | ||| || Sbjct 1832125 TCAAACTCAGGTCCCCACACGTCTTCCAGCCCAGGGGCCTTCTTT-GGACAGAACAAGGA 1832183 Query 63197 CCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 ||||| | || | || ||| || || ||||| || || || || | ||| | || | Sbjct 1832184 CCACTTTTCGCC-TCTTTCGACCCGCTTCATGAACAGGTCCGGCACCCACAATGCGTAGA 1832242 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | || ||||| | ||| | ||||| ||| || || || | ||||| | | Sbjct 1832243 ACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCAGGTTCAGGAAATCGA 1832302 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 |||||| | |||||| || |||| || ||||| | |||| || || |||||||| | Sbjct 1832303 GAATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGGACGCTTGTTTCCAC 1832362 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | || | |||||||| || | || || | ||| |||| ||| || | | Sbjct 1832363 CCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGGGAACAATGCCACTGG 1832422 Query 63436 ATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 | | || | | || | || ||||| || |||| | |||||| ||| ||| Sbjct 1832423 ACCTTCCTTGAGACCCAGTAATGATAGCACCCT-TGGCCCTGATATTATGAATATGCAGA 1832481 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT-CGTTTTAACG-TGTCATAGATAC 63552 || || || || ||| |||| |||||| |||||| ||| || | | | || ||||| | Sbjct 1832482 CCGATACCTCCAGCCGTTTTCGAGATT--TGCGCACACGTCTTGAGGGTATCGTAGATTC 1832539 Query 63553 CCTCTATGCTATCATCGAT--CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 | || ||| || ||| ||| | ||||||||| |||| ||| | Sbjct 1832540 CGTCGATGGAGTCG--GATGCCATAGCCACCAGAAAACAGGACGACAGTTGTCCCTGGGG 1832597 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TAGA- 63668 ||| || ||||| || | || ||||||||||| || || ||||| || | ||| Sbjct 1832598 AGTACCGGCATTGAAAAGCGTGGGAGAAGCGTGTGTGAA----TTTTCTGAGCGACAGAG 1832653 Query 63669 --TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63726 ||||||| || | | | | ||||| | ||| || || | || || |||| Sbjct 1832654 CCGTGTACGTTTCCAGCACCTTGGCGATATCGTCTCCATGGATCCCCAGAGCCACGCGCA 1832713 Query 63727 TTAACATGTGCTGAGGTCTTTCAACGAT-CTTGTT--GTTTATTTTCAACAAGTAGGATT 63783 | | ||| || ||||| | |||||| || ||| | | || || | |||||| || | Sbjct 1832714 TGAGCATATGTTGAGGACGTTCAACTATACTTCCTCCGGTTCTT---AGCAAGTACGACT 1832770 Query 63784 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 |||||| || || || ||||| || ||| || | ||||| ||||| Sbjct 1832771 TTTCCAGCGTCTTGAAGCCAAAGTACGAGTAGGAGAGGTCTCTGTCGTA 1832819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946880739560