Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 246 8e-60 seq3 127 5e-24 >seq2 Length=4160336 Score = 246 bits (272), Expect = 8e-60 Identities = 620/927 (67%), Gaps = 14/927 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| ||||| | ||||||| || |||| || | | ||| || || || ||| Sbjct 4110351 AAGACCCTGGAGCGAGCCTACCTGCTGCGAGTCAACGGCGCTGTTGCCGAGCGACCCCAG 4110410 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | ||||| || || | |||||||| || | ||| || ||||| Sbjct 4110411 CAGATGATCATGCGAGTGTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAG 4110470 Query 363520 ACATATAAGCTTCTAAGTGCTCGT--GTA-TTCACGCACGCCACGCCAACAATGTACAAT 363576 || || || || | | || ||| ||| ||||| ||||| | || || ||||||| Sbjct 4110471 ACCTACAA-CTAC-ATGT-CTCAGAAGTACTTCACCCACGCTTCCCCTACCCTGTACAAC 4110527 Query 363577 GCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCC 363636 || ||||| | | || |||||||| || || || ||| | || ||||||||||| ||| Sbjct 4110528 GCAGGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCC 4110587 Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 ||||| || |||| ||||| || |||| ||||||||| || |||||| || || || Sbjct 4110588 ATCGACGGCATCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGT 4110647 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGCACAGGGGG 363755 |||||| | || |||||||| | || | ||| | | |||||| ||| || || Sbjct 4110648 ATTGGTCTGTCCATCCACAACATCCGAGCCACCGGA-TCCTACATTGCCGGAACCAACGG 4110706 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 ||| || || | || |||||||| ||||| | |||| || || | |||||||| Sbjct 4110707 TACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGA 4110766 Query 363816 CCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGA 363875 |||||| || ||||| || || ||||| ||||| || ||||| || | || Sbjct 4110767 CCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGA 4110826 Query 363876 TATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGA 363935 | || ||||| ||||| || || ||| || || ||||| | || || || || Sbjct 4110827 CGTCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGTAAGGAGGAGATCCGAGCCCGAGA 4110886 Query 363936 TCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAG-- 363993 ||||||| || || ||| | | |||| || ||| |||| || || ||| | | | Sbjct 4110887 TCTGTTCCTGGCTCTCTGGATCCCCGACCTGTTCATGGAGCGAGTCGA-GCA-GAACGCC 4110944 Query 363994 AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGAC 364053 | ||| | ||| | ||||| |||| || || || || || || | |||||||| Sbjct 4110945 GAGTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTCGATGACGTCTACGGTGACGAG 4111004 Query 364054 TATGTTGC-TCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGC 364112 | | || || ||||| |||| || |||||| | ||| || || || || Sbjct 4111005 T-TCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGTCGACGAACCATCCCTGC 4111063 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 |||||||| |||| ||| |||| | |||| ||| | || | |||| ||| | Sbjct 4111064 CCAGAAGCTGTGGTACCACATTCTGGACTGCCAGACCGAGTCCGGTAACCCCTTCATGCT 4111123 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAG 364232 ||||| || | |||||||| ||||||||||| || |||| ||||| || || Sbjct 4111124 CTACAAGGACGCCTGCAACCGAAAGTCCAACCAAAAGAACCTGGGTACCATCAAGTCTTC 4111183 Query 364233 CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCT 364292 |||||| ||| ||||||| | || ||| | |||| || ||| || || || ||||| Sbjct 4111184 CAACCTGTGTTGCGAGATTGTCGAGTACTCTTCTCCTGATGAGGTCGCTGTCTGCAACCT 4111243 Query 364293 TGCGTCGATCGCGCTTCCGGCGTTTGT 364319 || || ||||| || || | ||||| Sbjct 4111244 GGCTTCCATCGCTCTGCCCACCTTTGT 4111270 Score = 122 bits (134), Expect = 2e-22 Identities = 337/512 (66%), Gaps = 10/512 (2%) Strand=Plus/Plus Query 364651 CAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCC 364710 |||||||| || ||||| || || || || | | ||| | ||||| || || Sbjct 4111614 CAGTTTGACCTGTGGAACGTGACTCCCTCCGAGCTCTGGGAGTGGGACGATCTCAAGGCC 4111673 Query 364711 AACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCT 364770 || | | |||| ||| | || ||||| || | || |||||||| || ||||| Sbjct 4111674 AAGATCATGAAGACTGGAATGCGAAACTCGCTGCTGGTGGCCCCCATGCCTACTGCTTCC 4111733 Query 364771 ACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCA 364830 ||| | ||||| ||||| ||||||||||||||| || | || ||| |||| || Sbjct 4111734 ACTTCTCAGATTCTCGGCTTCAACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCT 4111793 Query 364831 CGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCC 364890 || || || ||| | || || || | | | || || | || ||||||| || Sbjct 4111794 CGACGAGTGCTTGCTGGTGAGTTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTT 4111853 Query 364891 GACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTG 364950 || || |||||| || | |||||||||| ||| | |||| || || || ||| Sbjct 4111854 GAGGTTGGTCTGTGGAACGAGACCATGAAGAACCGAATCGTGGCCGACAACGGATCCGTG 4111913 Query 364951 CAGAACAT-TCCAGGAT-TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAA 365008 |||||||| ||| || |||| ||||| ||| | ||||| ||||| ||||| | Sbjct 4111914 CAGAACATCCCCAACATCCCCCAGGAGATC--AAGGACCTGTACAAGACCGTGTGGGAGA 4111971 Query 365009 TTTC---CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGA 365065 |||| | ||||| |||| || ||||| ||||| || | || || ||| Sbjct 4111972 TTTCTCAGAAGCGAA---TCATCGAGATGGCTGCCGACCGATCCCCCTTCATTGACCAGT 4112028 Query 365066 GCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATT 365125 |||||| | ||| | ||| | | || ||| | |||||| || |||||||| | Sbjct 4112029 CCCAGTCCCTCAACATCCACATCAAGGACCCCACCATGGGCAAGCTCACTTCCATGCACT 4112088 Query 365126 TCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 ||||||| ||||| ||||| ||||| ||| Sbjct 4112089 TCTACGGCTGGAAGAAGGGTCTCAAGACCGGT 4112120 >seq3 Length=2943663 Score = 127 bits (140), Expect = 5e-24 Identities = 376/576 (65%), Gaps = 4/576 (1%) Strand=Plus/Minus Query 363441 TATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGA 363500 ||| |||||||| || || |||||| | ||||| || ||| | || |||||| | || Sbjct 1832742 TATAGTTGAACGTCCTCAACATATGCTCATGCGCGTGGCTCTGGGGATCCATGGAGACGA 1832683 Query 363501 TGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCACGCC 363558 | | | | | | ||||| || | | ||| || |||| | |||||| ||||| Sbjct 1832682 TATCGCCAAGGTGCTGGAAACGTACACGGCTCT--GTCGCTCAGAAAATTCACACACGCT 1832625 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | || || | | |||||| || |||| | ||| |||| || || ||||| | Sbjct 1832624 TCTCCCACGCTTTTCAATGCCGGTACTCCCCAGGGACAACTGTCGTCCTGTTTTCTGGTG 1832565 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||| ||| |||||||| || |||| || || || |||| ||||| | || Sbjct 1832564 GCTATGGCATCCGACTCCATCGACGGAATCTACGATACCCTCAAGACGTGTGCGCAAATC 1832505 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || || | || || || || ||| | || || ||| | | || || | | Sbjct 1832504 TCGAAAACGGCTGGAGGTATCGGTCTGCATATTCATAATATCAGGGCCAAGGGTGCTATC 1832445 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||| || | ||| || | ||| | ||||||||||| | ||||| |||| Sbjct 1832444 ATTACTGGGTCTCAAGGAAGGTCCAGTGGCATTGTTCCCATGCTCAGGGTGTTCAACAAC 1832385 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || |||| ||||||||||||||| ||||| || |||||||| || ||||| Sbjct 1832384 ACCGCACGGTATGTCGACCAGGGTGGAAACAAGCGTCCCGGAGCGTTTGCCATCTATCTG 1832325 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 ||||| |||||||||||| | || || || | || ||||||||| ||| |||| Sbjct 1832324 GAGCCCTGGCATGCCGATATTCTCGATTTCCTGAACCTGCGGAAAAACCACGGAGCAGAG 1832265 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 || | ||| | || |||||||| ||| | ||||| | |||| || |||||||| Sbjct 1832264 GAGAACAGAGCAAGAGACCTGTTCTACGCATTGTGGGTGCCGGACCTGTTCATGAAGCGG 1832205 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014 || || ||| | || ||||| | || || ||| Sbjct 1832204 GTCGAAAGAGGCGAAAAGTGGTCCTTGTTCTGTCCA 1832169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352915332062