Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 seq1 127 2e-24 seq2 116 3e-21 seq3 100 3e-16 >seq5 Length=2767003 Score = 150 bits (166), Expect = 2e-31 Identities = 340/501 (68%), Gaps = 29/501 (6%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| ||||||||||| | ||||||||| | | | |||| || | |||||| Sbjct 1872235 AAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTCGACCTTTGGCGAGCGG 1872294 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 || | |||||||| || |||||| |||| || || ||| || ||| ||||||| Sbjct 1872295 CTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTC 1872354 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | ||| | ||||||||||||| || || ||||||||| || || || Sbjct 1872355 TGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCG 1872413 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA-CTCGCGTGCACGAC 46335 |||||||| ||||| || |||||||| ||||| || | | || |||| | | |||| Sbjct 1872414 AGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAAC-CGAC 1872472 Query 46336 --------AAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTG 46387 ||| ||| ||| |||| | ||| ||||| || | || | Sbjct 1872473 CCTCCAAGAAGATTG---TCGAGGACGTGAT-----TGT----CGAGGCCGTTGGTATCG 1872520 Query 46388 AGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAA 46447 || ||||||| | || | ||| |||||| | ||||| || |||||||| || | Sbjct 1872521 AGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAACGCCAAGCTCA 1872580 Query 46448 TGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CGAA 46505 ||||| | ||||| |||||||| || ||||| ||||| || ||| || || | | || Sbjct 1872581 TGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGT--TGCTCTCGGCAACTCCAA 1872638 Query 46506 GCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAAC 46565 | | || | ||| || || || || ||| | |||||||| |||| ||||| || Sbjct 1872639 GGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGAC 1872698 Query 46566 TAATTTTTTCGAAAAGCGCGT 46586 || || ||||| ||||| || Sbjct 1872699 CAACTTCTTCGAGAAGCGGGT 1872719 >seq1 Length=4858313 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| | || | || || ||||| || |||||||| ||| Sbjct 3612496 GCCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 3612555 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 3612556 GAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 3612615 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | ||| || | ||||||| Sbjct 3612616 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGAC 3612675 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || |||||||||||||| Sbjct 3612676 CTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| || |||||||| ||| | Sbjct 3612725 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3612784 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 3612785 AGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3612844 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||||| |||||| | Sbjct 3612845 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACC 3612904 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || || || |||||||| Sbjct 3612905 TCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || | ||| || ||||| |||||||| || Sbjct 3613194 GTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 3613253 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||||| || || || || ||||| ||| || |||| Sbjct 3613254 GCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 3613313 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||||| |||||| | |||| || | ||| || || || || || Sbjct 3613314 ACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTC 3613373 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 3613374 TTCACGAAAATCTGCAT 3613390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || |||||||| || |||||||| ||| | Sbjct 3613392 CCACCTCGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3613451 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| | || | |||||||||||||| || Sbjct 3613452 AGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3613511 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||| || ||||| || || ||||| | || | || |||| |||||||| Sbjct 3613512 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGA 3613569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 51810 GTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCAAG 51869 ||| ||||| || || ||||||||||||| | | |||| || ||||||| || | Sbjct 2020387 GTTTCCGAGGTCACCAACGTGTCGCTCGGAGTCGGTGGGGGCACCGTGGTTCTTCTTGAA 2020446 Query 51870 GGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGCAC 51929 ||| || ||||| ||| || || ||||| |||||| || |||| || |||||||| || Sbjct 2020447 GGGGTTGAAGTGGGGGCCAGCAGAAGTGCAGCCGTTGGTGTTGTCACCAAACTCGTGGAC 2020506 Query 51930 GTGAAAGCC 51938 ||| || || Sbjct 2020507 GTGGAATCC 2020515 >seq2 Length=4160336 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| || |||||||| || Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1074870 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || |||||||| || || || || ||||||||||| Sbjct 1074869 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1074823 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | || |||||||| || |||||||| || | || || | Sbjct 1736806 CGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCG 1736865 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| | || | |||||||||||||| || || || || ||| Sbjct 1736866 TCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1736925 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| ||||| | |||| ||| | | Sbjct 1736926 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 1736985 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || || || || || || || || || || |||| Sbjct 1736986 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 >seq3 Length=2943663 Score = 100 bits (110), Expect = 3e-16 Identities = 357/546 (65%), Gaps = 19/546 (3%) Strand=Plus/Plus Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTCGGC-GTCGCTGTATTGTACGATCTCGGCGCA 145689 ||||||| || || || ||| ||| |||| | || ||| || ||||| || | ||| Sbjct 1831885 GACGCCAGGTTGCACACCGCCACCTCTTCGGGTGACGA-GTACTGGACGATTTCCGTGCA 1831943 Query 145690 CAAATTGCTAC-ATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGTTGCACGC 145746 || ||| | || | |||||||| ||||| || ||||| || ||||| | |||||| Sbjct 1831944 CAGATT-CGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTTGC--GTTGCAGCT 1832000 Query 145747 GTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG 145806 |||||||||||||||| ||||||| || || || | ||| || | ||| | Sbjct 1832001 GTCCTTGTAGAGCATGAACGGTCCTCCGGTTTCGATCTGACTCGTGAGGATCGCCTTGAA 1832060 Query 145807 CAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAG 145866 || |||||||| | |||| | | | ||||| || ||||| | | ||| Sbjct 1832061 CAGCTCCTGCGCGTTGATCTGCGCGTTGAACAAGCCCTTTTTCTCGTACTCCTCGTATTT 1832120 Query 145867 CTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926 || ||||||| | | || | || ||| || || ||| || ||||| | || Sbjct 1832121 CTGCTCAAACTCAGGTCCCCACACGTCTTCCAGCCCAGGGGCCTTCTTTGGACAGAACAA 1832180 Query 145927 CGACCA---TACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 ||||| | |||| | | ||| |||| ||| |||| || |||||||||| || Sbjct 1832181 GGACCACTTTTCGCCTCT---TTCGACCCGCTTCATGAACAGGTCCGGCACCCACAATGC 1832237 Query 145984 GTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCAC 146043 ||| | || ||| | ||| || ||||| || || |||| | || || || | Sbjct 1832238 GTAGAACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCAGGTTCAGGAA 1832297 Query 146044 A-CTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG- 146101 | | | | || || || ||||| || || | ||||| ||| | ||||| || ||| Sbjct 1832298 ATCGAGA-ATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGGGACGCTTGT 1832356 Query 146102 --CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGC 146159 ||||||||||| || | ||| | ||||||| || || | | |||||| | | || Sbjct 1832357 TTCCACCCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGGGAACAATGC 1832416 Query 146160 CGCTGG 146165 | |||| Sbjct 1832417 CACTGG 1832422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012558093440