Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 >seq5 Length=2767003 Score = 165 bits (182), Expect = 1e-35 Identities = 394/592 (67%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| || || ||| ||| ||||||||||||| || | |||||||| || || Sbjct 1872447 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGT 1872388 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| |||||||| || || ||||| || ||||| || ||||| || || || || || || Sbjct 1872387 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAA 1872328 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTC 32833 ||| || || || || || |||||||| || || | ||| ||| | || || ||| Sbjct 1872327 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTC 1872268 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 |||||||| | ||||| ||||||||||| || | || || || ||||| || || Sbjct 1872267 GGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || || || ||| || || || || || | ||||| || |||| || || Sbjct 1872207 GTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTA 1872148 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||||| || ||||| || || || || || ||||||||||| | ||||||| Sbjct 1872147 CGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 1872088 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | ||||| || | | || || ||||| || || || || Sbjct 1872087 GACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGC 1872028 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTAT 33129 ||||| || |||| || || || || | ||||| | |||| | || | Sbjct 1872027 AGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTC-GTTGTTGAGCCGGTTCT 1871969 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 1871968 CCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGG 1871909 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||| || ||||| | |||||| || || || || || || || | ||||| Sbjct 1871908 CCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAA 1871857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631675263600