Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 156 9e-33 seq1 125 1e-23 seq2 114 3e-20 >seq5 Length=2767003 Score = 156 bits (172), Expect = 9e-33 Identities = 554/856 (65%), Gaps = 16/856 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 1872710 TCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1872651 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||| || || || | | ||||| || |||||||| | Sbjct 1872650 GAGTTGTAGACCTTGGAGTTGCCGAGAGCAACCAGCAGACGGTCGGCGACAAACTCAATG 1872591 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | |||||| || | || | || || | || || | | Sbjct 1872590 TACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGTCCGCAGGGCAGAGCGTCGGTCAGG 1872531 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAG 251801 || |||| ||| | |||| ||||| | | | ||| || | | | | || | Sbjct 1872530 AACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACAATCTTCTTG-GAGGG 1872472 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| || | ||| | || || | |||| | ||||||||||||||| || Sbjct 1872471 TCGGTTCTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCG 1872412 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 1872411 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAA 1872352 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | | || || || ||||| | | |||||||| | | || | || || Sbjct 1872351 GATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCG 1872292 Query 251982 CTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 ||| |||| ||||| ||| | || | |||| | ||||| | |||||||| Sbjct 1872291 CTCGCCAAAGGTCGACTCGTCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTT 1872232 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 | |||||| || ||||| || | || || || | ||||| ||||| ||| Sbjct 1872231 GATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGAT 1872172 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || | ||| || |||||| | ||||| |||||| || | | |||||| | Sbjct 1872171 GTATGTGTCGATCAGCAGCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAA 1872112 Query 252159 AGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 | ||||| | | | | || ||| | || || ||| || | | | Sbjct 1872111 GCCGTAGAAGCACTTGGC-CTCG---GGGACCTGCACCTCGCCGGAGAATCGCTCCACCA 1872056 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| |||| || |||||| | ||||||||| | || | | | ||||||| Sbjct 1872055 GGTTCTCGTTCACAATACCATCGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGA 1871996 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 ||||| |||| ||||||| || ||||||| | ||||||| ||| || | Sbjct 1871995 ACCGCTCGTCGTTGTTGAGCCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCAATCT 1871936 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTAC 252393 | || | |||||||| | | | | |||||||||||||| ||| | | || ||||| Sbjct 1871935 CCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGC-CAGATCTCGTGGTAC 1871877 Query 252394 TTGATTGGGAA-AGCA 252408 | ||| ||||| |||| Sbjct 1871876 TGGATGGGGAAGAGCA 1871861 >seq1 Length=4858313 Score = 125 bits (138), Expect = 1e-23 Identities = 189/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 |||||||| ||||| ||||||||||||||||| || | |||| | || | ||| Sbjct 2148790 TCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTCTTGCCACCGCCGTCCTCCGAAAGGCC 2148849 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 ||| |||| |||||||||||||| |||||||| |||| ||| |||||| || ||||| Sbjct 2148850 GATATCCTGCTGCTTGATGAGCCCACCAACCATCTGGATACCGTCAACGTTGCTTGGCTG 2148909 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 || |||||| | || ||| | | | | ||| |||| ||||| ||||||||||| Sbjct 2148910 GTCAACTACCTCAACA-CCTGTGG--TATCACCTCCATCATCGTCTCCCACGACTCTGGT 2148966 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || ||| || ||| || ||||| |||| | | |||||| ||| Sbjct 2148967 TTCCTCGACAACGTCTGTGAGTACATTATCCACTACGAGCGA---TTCAAGCTCCGAAAG 2149023 Query 279942 CACATCGGCAACCTGTCTGCTTTCGT 279967 ||| || ||||| || | ||||| Sbjct 2149024 TACAAGGGTAACCTCTCCGAGTTCGT 2149049 Score = 118 bits (130), Expect = 2e-21 Identities = 133/174 (76%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 2148436 GGAGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCCAAGATTCTGCTGAAC 2148495 Query 279405 TCTACCC-GCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || || || ||||||| ||| || || |||||| || ||||| || || Sbjct 2148496 CGAACCCAGCTTCGAC-TCAAGCGAGGCCGACGATACGGTCTCTGTGGCCCCAACGGTGC 2148554 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 |||||| ||| || ||||| |||||||| ||||| ||| | | ||| ||||| Sbjct 2148555 TGGTAAGTCCACCCTGATGCGAGCCATTGCCAACGGCCAGGTCG-AGGGTTTCC 2148607 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || ||||||| || || || ||||| ||||| || ||| Sbjct 2149807 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCCCGAATCCGAGGTCTGTCTGGTGGACAG 2149866 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| || || | | || | ||||| | || || |||||||||| || Sbjct 2149867 AAGGTCAAGCTGGTGCTTGCCGCCTGTACCTGGCAGCGACCCCATCTGATCGTTCTTGAT 2149926 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || || || || |||||| Sbjct 2149927 GAGCCTACCAACTATCTGGATCGAGACTCTCTTGGAGCTCTG 2149968 >seq2 Length=4160336 Score = 114 bits (126), Expect = 3e-20 Identities = 413/637 (65%), Gaps = 13/637 (2%) Strand=Plus/Minus Query 293140 CGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACT 293199 || || ||||| | || || | | |||| ||| ||||||||| |||||||||| Sbjct 4112008 CGGTCGGCAGCCATCTCGATGATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGG 4111949 Query 293200 GCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATC 293259 |||||| || | | ||| | ||||| | || || || ||| | || Sbjct 4111948 TCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATT 4111889 Query 293260 TGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGA 293318 |||||||||| |||||| ||| || || || ||| || || || || | | Sbjct 4111888 CGGTTCTTCATGGTCTCGTTCCACAGACCAACCT-CAACCAGGTCCTTGAGCAGCCAGGG 4111830 Query 293319 GTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGG 293378 |||||||| ||||||||||||| || || || ||||||||| || ||| ||| Sbjct 4111829 GTTGACAATCTGGAACTCACCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGG 4111770 Query 293379 TTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGT 293438 ||| ||| | ||| |||||||| ||| || || |||||||| | || Sbjct 4111769 CTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCCAC 4111710 Query 293439 CGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCAGTCC-A 293494 | ||| ||||| | || || |||| ||| | | |||| | |||| ||| | Sbjct 4111709 CAGCAGCGAGTTTCGCATTCCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCA 4111650 Query 293495 GAGCAGTCTGAGGT-GTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGA 293553 |||| || |||| || || ||| || | | |||||| | ||||||| ||||||| Sbjct 4111649 GAGC--TCGGAGGGAGTCACGTTCCACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGA 4111592 Query 293554 GACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACA 293613 || |||| ||||| | | || | |||| | | |||| |||| |||||||| Sbjct 4111591 GAGCCCTGGAAGGTCTCGTAAGCACCGTCCTCAAGGGCCATCTCGTAAGAAGCCTCAACG 4111532 Query 293614 GCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCA 293673 ||| | ||| ||| ||||||||||| ||||||||| |||| ||| || || Sbjct 4111531 GCACCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCG 4111472 Query 293674 AACGGCATCTTCAGCTGG--AAGAACACATCCTGCAGACCCTGTACACCTACACCAACGG 293731 || |||| || | || | ||| ||| ||||||||| ||||| | | ||| || Sbjct 4111471 AAGGGCA--GTCGGAGGGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGG 4111414 Query 293732 GGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 | || | ||| ||||| | ||| ||||| || || Sbjct 4111413 GTCGGTGTCGCATGTTGGACTTCTTGGCCTCAGGGAC 4111377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836260064481