Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 232 1e-55 seq2 159 6e-34 seq1 158 2e-33 >seq5 Length=2767003 Score = 232 bits (256), Expect = 1e-55 Identities = 595/893 (67%), Gaps = 25/893 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| ||||||||||| || || ||||| |||||||||||||| |||||| | Sbjct 1872747 CATGACGCCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 1872688 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| || | | ||||| || || Sbjct 1872687 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCC 1872628 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | ||||| || || ||||| |||||||||| ||| || | | ||| Sbjct 1872627 GAGAGCAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTT 1872568 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| || | || | |||||| | |||||| | ||| |||| ||| | | || | Sbjct 1872567 CATTCCGAGCAGTCCGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGG- 1872509 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAA------GGGACAGCTTGTTCTCGAGCTTCGA 10228 ||||||| || | | | || || ||| ||| | ||||||||| | ||| Sbjct 1872508 --CCTCGACAAT-CACGT--CCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGCGA 1872454 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | || || |||| | ||| || |||||||| ||| ||||| ||||||||| Sbjct 1872453 GAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGA 1872394 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || || ||||||||||| || || || |||||||| |||| | |||||| || Sbjct 1872393 GAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCC 1872334 Query 10349 GGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG---GAG 10403 ||||| |||||| ||||| ||| | |||||| || ||||| | ||| || Sbjct 1872333 GGAGA--AGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGAC 1872276 Query 10404 CGGTCGCGCGAAAAGTATTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGT 10462 |||| || | | || ||| ||||| | |||||||| | | ||||| || Sbjct 1872275 TCGTCGTCGGAGATCCACTT-GAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGT 1872217 Query 10463 CTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAG 10522 |||||| || | ||| || | | | ||||| | ||||| || | || | || Sbjct 1872216 CTCGATGGCGTTGAACAGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAG 1872157 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATAC 10581 ||| ||||| || ||||| | |||| | |||| | ||||||| || Sbjct 1872156 CAGCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTT 1872097 Query 10582 GTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGC 10641 | ||| |||| || || || ||| || | ||||||||| |||| || | Sbjct 1872096 G-GCCTCGGGGACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATAC 1872038 Query 10642 CATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA 10701 ||||| | ||||||||| | || | |||| ||||||| ||||| || | ||| | Sbjct 1872037 CATCGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGA 1871978 Query 10702 G-TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 | ||| | |||||| ||| |||| | ||| | | |||||| ||||||||||| Sbjct 1871977 GCCGGTTCTC-CCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAA 1871919 Query 10761 GTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 | || ||||||||||||||||||| | || ||| ||||| |||||||||| Sbjct 1871918 GAAGCCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAA 1871866 Score = 116 bits (128), Expect = 7e-21 Identities = 441/674 (65%), Gaps = 30/674 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||| ||| | ||| ||| | ||| | || || | | Sbjct 1785887 TATCGCCACTGCAGGTACTGGTTGGGCGTCTTTTCCTTGTGCTGCTCCACGTGCTGCAGA 1785946 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| | ||| | || |||| |||||| |||||| || |||| ||| Sbjct 1785947 GCGTGCTGGGCAATGTATCCGATTCGCAGGTTGGGGTGCTTCTCGACCTTGCCCTCAGTA 1786006 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | || ||||| ||||||||||| || || | ||| || || || ||||| || Sbjct 1786007 GGCACAACTTCACCGGTCAGGACCTTGATCAGGGTCGACTTTCCGGCTCCGTTGGGACCC 1786066 Query 225158 ATCACGCCAATCCGGGATGACATTG-CAACCTGCGAGTTCACGTTGCTGAAGA----TCT 225212 | || | | || || | ||| | || | | || |||| || |||| || Sbjct 1786067 AGAACCGCGACTCGAGACGCCATGGACAGCGAACAAG-AGGCGTT-CTTAAGAGAGGGCT 1786124 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACG-CAGCTTCATG--ATGGCACGGTCCT 225269 ||| | | |||| | |||| | || || || | || | ||||| ||| | Sbjct 1786125 TGGGGGCGTTGGGGTAGGTGAAGG--AGGCGTCGACAAC-TCGGGCAATGGCTCGGGTGT 1786181 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT--GGTCACCGCGTC 225327 |||| | ||| ||| | ||||| ||||| || ||| ||| | ||| Sbjct 1786182 TGGATCGCACACCTGACAGAATTCCGGGAGGAGGGAAGGCCATCTTCAGGT--TGGAGTC 1786239 Query 225328 CTTCAGGTCGTAGTAAG--ATGCAGCCTCGGGTCG--CTTTGCCACGAAAGCAGACAGGT 225383 ||||| |||||| | ||| |||| ||||| | ||| |||||| | | ||||| Sbjct 1786240 GGTCAGGGTGTAGTAGGCCTTGC--CCTCAGGTCGCACCTTG--ACGAAATCGGCCAGGT 1786295 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTG 225443 | || || | ||||| || |||||||| ||| |||| | | || || | Sbjct 1786296 TACCCTTGTAGTAGACCAGCTT---CTTGTTCTCGTAGTGAGCAATGTCGGTACAGACGG 1786352 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGA 225503 |||| |||||||| |||||||| || ||||| | || | | || || || | | Sbjct 1786353 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCAACCA 1786412 Query 225504 GGTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 ||| || || ||||| ||||||| || |||| ||||| ||||| ||||| || Sbjct 1786413 GGT-AGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCGTCGAGC 1786471 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| ||||| || | ||||| ||||| || | || ||||||||| ||||| || Sbjct 1786472 AGCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCACCCT 1786531 Query 225623 CCGGACAGGGAGCC 225636 || ||||| | ||| Sbjct 1786532 CCAGACAGAGCGCC 1786545 >seq2 Length=4160336 Score = 159 bits (176), Expect = 6e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| || | ||| || |||||||| || |||||||| || || || Sbjct 1736794 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1736853 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 1736854 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 1736913 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 1736914 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 1736973 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | ||||||||| || || || ||||||||||| || || |||| Sbjct 1736974 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || |||||||| || |||||||| || || || Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1074870 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || ||||||||||| || ||||||||| Sbjct 1074869 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 1074822 >seq1 Length=4858313 Score = 158 bits (174), Expect = 2e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || || ||||| || |||||||| || || ||||| || | ||||| || | |||||| Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||||| || ||||| || |||||||| |||||||| || ||||| | | Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| || ||||| || | || || || || | |||||||| ||||| |||||| Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||| Sbjct 3613371 GTCTTCACGAAAATCTGCAT 3613390 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || || ||||| || |||||||| || ||||| Sbjct 3612725 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3612784 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || |||| || ||||| || ||| Sbjct 3612785 AGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3612844 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || ||||| || | || || || Sbjct 3612845 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACC 3612904 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| || ||||||||||| || |||||||| Sbjct 3612905 TCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 125 bits (138), Expect = 1e-23 Identities = 475/730 (65%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 225280 ACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTA 225339 |||||| ||||| |||||||||||||| | ||| || | | | | ||| ||||| Sbjct 2149137 ACCCTCAAGGAAACCGGGCTCGGGGAAAGAGAAGTTGATCTCGGAGGCACCCAGCTCGTA 2149078 Query 225340 GTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGT 225399 ||| || || || ||| ||||| | || ||||| || || ||| Sbjct 2149077 GTAGGACTTGGCGGAAGGAACCTTCTTGACGAACTCGGAGAGGTTACCCTTGTACTTTCG 2149018 Query 225400 GAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGA 225459 |||||||| || |||||| || | ||| | || || ||| ||||| ||||| Sbjct 2149017 GAGCTTGAA--TCG-CTCGTAGTGGATAATGTACTCACAGACGTTGTCGAGGAAACCAGA 2148961 Query 225460 GTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCA 225519 ||||||||| || |||||||| | | | | |||| ||||||| ||| ||||| Sbjct 2148960 GTCGTGGGAGACGATGATGGAGGTGA--TACCACAGGTG-TTGAGGTAGTTGACCAGCCA 2148904 Query 225520 TGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATC 225579 || |||||| | |||| ||||| || || || || || |||||||| || || | Sbjct 2148903 AGCAACGTTGACGGTATCCAGATGGTTGGTGGGCTCATCAAGCAGCAGGATATCGGCCTT 2148844 Query 225580 AATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGAT 225639 ||||| |||| | |||| ||||||||| ||||| || || ||||| ||| ||| Sbjct 2148843 TCGGAGGACGGCGGTGGCAAGAGCCAGCTTCATCTTCCATCCACCAGACAGAGAGGTGAT 2148784 Query 225640 TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCT---GGATAATGCG 225696 | | | | | | ||| || | | || || ||| || ||| Sbjct 2148783 GGGCATTCGGGTCATCTCGTCGGTGAACAGGAAGTCAAGCAGCTGCTTTCGGACCTCCTC 2148724 Query 225697 CTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCAT 225756 ||||| | | || || || || | |||| || || ||| || ||| | | Sbjct 2148723 CTCGGTACCGATG-GACTCGC--CG--GCGGTCTTTCG-GACGTAGTCGACAACGTTGGT 2148670 Query 225757 GTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCAT 225815 ||| | | | |||||||||||||||| ||| | || || || || | | | Sbjct 2148669 GTCGGCGTGGGTACCGTCAATGTCGTGGTCGACGAAGACAGTTCGACACTCGTCCTGGGT 2148610 Query 225816 CGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGC 225875 |||||| ||||| | |||||| || ||||| || || | |||||| ||| || || | Sbjct 2148609 -GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCAC 2148551 Query 225876 CGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGC-GCGTGGAGTTC 225934 ||||||| || ||| ||||| | || ||||||| || || || | || |||| Sbjct 2148550 CGTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCGAAGCTGGGTTCGGTTC 2148492 Query 225935 AGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCC 225994 || || |||||| |||| || || || |||||||| || | ||||| ||||| ||||| Sbjct 2148491 AGCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCCCTCG 2148432 Query 225995 TCGGTCTCCT 226004 ||| ||||| Sbjct 2148431 TCGTCCTCCT 2148422 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| || || || ||||| || |||||||| || ||||| Sbjct 3613392 CCACCTCGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3613451 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||||| || ||||| || ||| Sbjct 3613452 AGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3613511 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || || |||||||| |||||||| | ||||||| ||||||||||| Sbjct 3613512 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 3613558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621927668520