Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 131 4e-25 seq1 114 3e-20 >seq5 Length=2767003 Score = 131 bits (144), Expect = 4e-25 Identities = 216/309 (70%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 333687 TCGGTAAGGGCGTAGTAA--CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGAT 333744 ||||| |||| |||||| || || || || ||| ||| ||||| |||| ||| | Sbjct 1786238 TCGGTCAGGGTGTAGTAGGCCTTGCCC--TCAGGTCGCACCTTGACGAAATCGGCCAGGT 1786295 Query 333745 TTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAG 333804 | |||||||| | |||||| ||| ||||| || ||| ||| || || | Sbjct 1786296 TACCCTTGTAGTAGACCAGCTTCTTGTTC---TCGTAGTGAGCAATGTCGGTACAGACGG 1786352 Query 333805 CGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCA 333864 |||| ||||| |||||||||||||| ||||||| | | | ||| || || | || Sbjct 1786353 CGTCCAGGAAGCCGGAGTCGTGTGAAACAATCAGAGAGGTGATGTCGGTATGGGCAACCA 1786412 Query 333865 GGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 333924 |||| || ||||||| | ||||| |||| |||||||| || |||||||| || | Sbjct 1786413 GGTAGTCCTGCAGCCACTTGACGTTGCCCACATCCAGATGGTTAGTAGGCTCGTCGAGCA 1786472 Query 333925 GTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 333984 | || | | || |||| |||||| || || || || | || ||||| |||||||||| Sbjct 1786473 GCAGAATGTCGGCCTTCATGAGCATGGCTCGGGCCAGCTCCAGCTTCATCTTCCACCCTC 1786532 Query 333985 CTGAAAGAG 333993 | || |||| Sbjct 1786533 CAGACAGAG 1786541 Score = 118 bits (130), Expect = 2e-21 Identities = 552/865 (64%), Gaps = 25/865 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||||| | || || ||| | ||||| |||||||| | ||| | || ||| Sbjct 1871866 TTCCCCATCCAGTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGG 1871925 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAAC---TCAAT 242991 ||| ||||||| || ||| | ||| | | ||||||| ||||| | |||| Sbjct 1871926 ACCGCCGAGGAGATTGATCTCGGCAAGGACATGGGCGACTGG---GAGAACCGGCTCAAC 1871982 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 ||||||| || |||||| ||| | || | || || || | |||||||||||| Sbjct 1871983 AACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGTATT 1872042 Query 243052 GTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 243110 |||| || || ||| | | | | | | | | | || ||| || ||||| | Sbjct 1872043 GTGAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTGCAGGTCCCCGAGGCCAAGTG 1872101 Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170 || || | | ||| | | | || ||||| || ||| || | || || || Sbjct 1872102 CTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGAT 1872161 Query 243171 CGACGCGCTTATTTCAGATGAAC---AAGAGCGAAACGAGCTTTTCGACGCCATCGAAAA 243227 |||| | || ||| | || | | ||||||| | | || ||| |||||||||| | Sbjct 1872162 CGACACA--TACATCA-AGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGAC 1872218 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA---GAACCCG-GTA 243283 ||| || | | || ||||| | ||||| | |||||| | || || || Sbjct 1872219 CATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGTC 1872278 Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 | | || || ||||| || |||||| | ||| || || || | || ||||| Sbjct 1872279 GACCTTTGGC-GAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 1872337 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 ||| | ||||||| ||||| ||| |||| | ||||| |||||| | || | Sbjct 1872338 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCA 1872397 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA 243463 ||||| ||||| || |||||||| || ||| | || | || | | || Sbjct 1872398 ACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGC 1872457 Query 243464 AGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTG 243520 | ||| ||||| | ||| | | | | | ||| | | | || || || |||| Sbjct 1872458 ACCTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCGTTG 1872514 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | ||| |||| ||| | ||||||| | || ||| | || | || |||||| | Sbjct 1872515 GTATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAACGCCA 1872574 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | |||||| | |||||||| || || || |||||||| | | | || || || | Sbjct 1872575 AGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACT 1872634 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 || || |||||||||| |||||||| | ||| |||||| ||| ||||| || | Sbjct 1872635 CCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCA 1872694 Query 243701 AAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||||||||| ||||| || Sbjct 1872695 AGACCAACTTCTTCGAGAAGCGGGT 1872719 >seq1 Length=4858313 Score = 114 bits (126), Expect = 3e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| ||||| |||| || |||||||| || || ||||| || || Sbjct 2148609 GGGGAAACCCTCGACCTGGCCGTTGGCAATGGCTCGCATCAGGGTGGACTTACCAGCACC 2148550 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACC-GCGTATTGTTCA 334299 ||| || ||||| |||||||| || || ||||| || | ||| | | || ||||| Sbjct 2148549 GTTGGGGCCACAGAGACCGTATCGTCGGCCTCGCTTGAG-TCGAAGCTGGGTTCGGTTCA 2148491 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || |||||||| || ||||| | |||||||||||| || Sbjct 2148490 GCAGAATCTTGGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCTCC 2148436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879420643350