Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq1 120 3e-22
>seq2
Length=4160336
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||||| | |||| || | |||| ||| |||||| || || ||||| ||||
Sbjct 1736793 ACCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1736852
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || |||||||| || ||||| || |||||||||||||| | ||
Sbjct 1736853 AAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGG 1736912
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| || |||||||||| ||| || |||| ||| | | | |||||| || ||||
Sbjct 1736913 AATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCA 1736971
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207
| |||| |||||||| ||||| || || ||||| |||||||||||||
Sbjct 1736972 CCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019
Score = 113 bits (124), Expect = 5e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| | |||| || | ||| | ||| |||||| || || ||||| ||||
Sbjct 1075050 ACCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1074991
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || ||||||||||| ||||| || |||||||||||||| | ||
Sbjct 1074990 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1074931
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | |||||||||| ||| || |||| ||| | | | |||||| || ||||
Sbjct 1074930 AATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCA 1074872
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210
| || | ||||| || || || || || ||||| ||||| || |||||||
Sbjct 1074871 CCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821
>seq1
Length=4858313
Score = 120 bits (132), Expect = 3e-22
Identities = 146/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | |||||| || |||| || |||||||||||||||||
Sbjct 3612760 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAA 3612819
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| |||||||||||||| | || | | |||||||||| ||| | || | |||| ||
Sbjct 3612820 GATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 3612877
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | || ||| || || || |||| |||||||| || || || || |||||
Sbjct 3612878 TTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTG 3612937
Query 42195 ACAAAGATTTGCAT 42208
|||||||| |||||
Sbjct 3612938 ACAAAGATCTGCAT 3612951
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| |||| || || || | || || |||||||||||||||||
Sbjct 3613199 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 3613258
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 3613259 AATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3613317
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || ||| || || || |||| |||||||| || || || || ||||| |
Sbjct 3613318 TGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCA 3613377
Query 42196 CAAAGATTTGCAT 42208
| || || |||||
Sbjct 3613378 CGAAAATCTGCAT 3613390
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | || || || |||| || ||||||||||| |||||
Sbjct 3612533 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 3612592
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| |||||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 3612593 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 3612651
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| || || || |||| |||||||| || || || || ||||| ||
Sbjct 3612652 GTCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCAC 3612711
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 3612712 GAAAATCTGCAT 3612723
Score = 91.5 bits (100), Expect = 2e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | |||||| || |||| || ||||||||||| |||||
Sbjct 3613427 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAA 3613486
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116
||||||||||||||||| | || | | ||||||||||
Sbjct 3613487 AATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 3613526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212521603440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |