Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 seq1 118 1e-21 seq2 113 4e-20 >seq5 Length=2767003 Score = 170 bits (188), Expect = 2e-37 Identities = 492/748 (66%), Gaps = 13/748 (2%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||| | |||||||| | || ||| ||||||| |||| ||||| || || ||||| | Sbjct 1871980 AACAACGACGAGCGGTTCTTCATCTCGCACGTGCTGGCCTTCTTTGCTGCTTCCGATGGT 1872039 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCA 52204 || |||||| ||||| | ||| || | ||| | || | || | |||||| | Sbjct 1872040 ATTGTGAACGAGAACCTGGTGGAGCG-ATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAA 1872098 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| |||| | |||| ||||| Sbjct 1872099 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACGTACTCGCTGCT 1872158 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGC 52323 || || || | || || || | ||||| | ||| | || || ||||| Sbjct 1872159 GATCGA-CACATACATCAAGGACCCCAAGGAGCGAACCTACCTGTTCAACGCCATCGAGA 1872217 Query 52324 ACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG 52383 | | || ||| | || ||||| | ||||| | ||||||||| |||| Sbjct 1872218 CCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCGCTCAAGTGGATCTCCGACGACGAGT 1872277 Query 52384 CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCA 52443 | || | | |||||| || | ||||| ||| ||||||||| | || || |||||| Sbjct 1872278 CGACCTTTGGCGAGCGGCTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 1872337 Query 52444 GCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 || ||| ||||||| | | || | | ||| | ||||||||||| || ||| || Sbjct 1872338 CGTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCA 1872397 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563 ||||| | || || || ||||| || |||||||| |||||||| || || || | Sbjct 1872398 ACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCT--- 1872454 Query 52564 CGCGCGTGACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAG--GAGGCGG 52620 ||| | | ||| || || | | ||| | ||| | || | ||||| | Sbjct 1872455 CGCACCT---CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTGATTGTCGAGGCCG 1872511 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | | |||||| ||||||| | || | ||| ||||| || ||||| || ||||||| Sbjct 1872512 TTGGTATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGCGGACTGCTCGGAATGAACG 1872571 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 | || ||||||| ||||||| |||||||| || || |||||| |||| ||||| Sbjct 1872572 CCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCTCTCGGCA 1872631 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| || |||| | ||| || || || || ||| | ||||| ||||| | | Sbjct 1872632 ACTCCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTGGCCG 1872691 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||||||||||| ||||||||||| || Sbjct 1872692 GCAAGACCAACTTCTTCGAGAAGCGGGT 1872719 >seq1 Length=4858313 Score = 118 bits (130), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||| || ||||| | Sbjct 3612758 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCG 3612817 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || ||||| || ||||| ||| | || | || | Sbjct 3612818 AAGATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGAC 3612876 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| |||| ||||| ||||||| || | || || |||||||| || | Sbjct 3612877 GTTG-TCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCAGTCAGGGTCT 3612935 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 3612936 TGACAAAGATCTGCAT 3612951 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || |||||| || || ||||||| Sbjct 3612530 GATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCG 3612589 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 3612590 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 3612649 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||||| || | || || || || || || || Sbjct 3612650 TTGTCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTC 3612709 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 3612710 ACGAAAATCTGCAT 3612723 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | ||| | ||| | | |||||||| || |||||||||||| | Sbjct 3613392 CCACCTCGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3613451 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || ||||||| | || || ||||| |||||||| || Sbjct 3613452 AGAGTTCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGA 3613511 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||||| ||||| | Sbjct 3613512 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAGGACTCGA 3613569 Query 138566 CCT 138568 ||| Sbjct 3613570 CCT 3613572 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 57303 CTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCT 57362 || |||||| || | ||| || ||||| ||| ||| || |||| || ||||| | | Sbjct 2020381 CTTGACGTTTCCGAGGTCACCAACGTGTCGCTCGGAGTCGGTGGGGGCACCGTGGTTCTT 2020440 Query 57363 GCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 57422 | |||||| ||||| ||| || || |||||||||||| || |||| || ||||| Sbjct 2020441 CTTGAAGGGGTTGAAGTGGGGGCCAGCAGAAGTGCAGCCGTTGGTGTTGTCACCAAACTC 2020500 Query 57423 GTGAACGTGAAATCC 57437 ||| ||||| ||||| Sbjct 2020501 GTGGACGTGGAATCC 2020515 >seq2 Length=4160336 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| ||| | ||| | | |||||||| || ||||||||||| Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| || ||||| |||||||| || Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1074870 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || || || || |||||||||||||| Sbjct 1074869 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1074823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || ||||||||| || || |||| Sbjct 1736827 GACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCG 1736886 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 1736887 AAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 1736946 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || || ||||| || || || Sbjct 1736947 TTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTG 1737006 Query 138601 ACAAAAATCTGCA-TGGCTTA 138620 ||||| || |||| ||| ||| Sbjct 1737007 ACAAAGATTTGCACTGGGTTA 1737027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262145665520