Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 196 5e-45 seq2 107 2e-18 seq1 107 2e-18 >seq5 Length=2767003 Score = 196 bits (216), Expect = 5e-45 Identities = 408/600 (68%), Gaps = 21/600 (4%) Strand=Plus/Plus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGC- 47037 ||||||| |||||| |||| || || || || | |||||| ||| || ||| Sbjct 1872132 CATCCACTCGGAAACGTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAGGAGCG 1872191 Query 47038 AAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 || | || || || |||| |||||| ||| |||||| | | |||||||| |||| Sbjct 1872192 AACCTAC-CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGG 1872250 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCC 47156 | | |||| || |||| | ||| || | | ||| || ||||||| || ||| Sbjct 1872251 CGCTCAAGTGGATCTCCGACGACGA-GTCGACCTTTGGCGAGCGGCTGATCGCCTTTGCC 1872309 Query 47157 ATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAA 47216 |||||||||| |||||||||| ||| || || | || || | | || | | Sbjct 1872310 GCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGA 1872369 Query 47217 GGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCAC 47276 || | |||||||||||||| || ||||||||| ||||| ||||||| || |||||| Sbjct 1872370 GGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCAC 1872429 Query 47277 ACCAACTTTGCCTGT---CTCTACT-ACAACACTAGAGTCGA---TCAAAAGTTGGACGT 47329 ||| ||||||||||| |||| || || | | ||| ||| || || || | Sbjct 1872430 ACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAACCGACCCTCCAA-----GAAG- 1872483 Query 47330 GCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGA 47389 | ||| ||| || ||| ||| ||||| | || ||| |||||| | |||| Sbjct 1872484 ----ATTGTCGAGGACGTGATTGTCGAGGCCGTTGGTATCGAGCAGGAGTTCCTGACCGA 1872539 Query 47390 GGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATT 47449 ||||||||| | | ||||||||||| || | ||| | ||||||| || || Sbjct 1872540 CGCTCTGCCCTGCGGACTGCTCGGAATGAACGCCAAGCTCATGTGCCAGTACATTGAGTT 1872599 Query 47450 TGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCC 47509 |||||||||||| ||||| ||| || | ||||| | ||| || || || || Sbjct 1872600 TGTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCCAAGGTCTACAACTCCACCAACCC 1872659 Query 47510 ATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||||| || ||| | ||||| ||||| | |||||||||||||| ||||||||||| || Sbjct 1872660 CTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGT 1872719 >seq2 Length=4160336 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || || ||||| || Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| || Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1074871 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || || || |||||||||||||| Sbjct 1074870 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1074823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/163 (74%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | |||| ||||||||| || || || |||||||||||| Sbjct 1736866 TCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1736925 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| || | |||||| | | ||| || |||| ||| | Sbjct 1736926 TCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 1736984 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 127119 || ||||| || || || || ||||| || |||| ||| ||| Sbjct 1736985 GGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1737027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 147267 GGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGC--AGGAAACACGAACAC 147324 ||| | |||||||||||||||| ||| ||||| ||| ||| ||||||||||| || Sbjct 4110608 GGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGAC 4110551 Query 147325 ATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-C 147383 || ||||| | || || || |||| || ||| ||||| ||||| || | Sbjct 4110550 ATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAA-GTACTT 4110492 Query 147384 CAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAG 147443 | || ||| | | || || |||||||| | || || |||||||| || | | Sbjct 4110491 CTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATGTTGTCGCCGTGGATACCGAC 4110432 Query 147444 GGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAG 147503 | || ||||||| ||| ||||||||||| || |||| || | |||||| | || Sbjct 4110431 AGACACTCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCGCCGTTGACTCGCAGCAG 4110372 Query 147504 ATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 || | | | | ||| || ||||| |||||||| |||||| | |||| | || || Sbjct 4110371 GTAGGC-TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 4110316 >seq1 Length=4858313 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | |||| ||| | |||||||| || || || ||||| ||| | Sbjct 3612725 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3612784 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| |||| | ||||||||| || || || Sbjct 3612785 AGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3612844 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| || | ||| || | ||| || Sbjct 3612845 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATGGTATCGGAGGACTCAAC 3612903 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || ||||| || || ||||| |||||||| Sbjct 3612904 CTCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | || | || || || || || || ||||| ||| Sbjct 3612497 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 3612556 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 3612557 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 3612616 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| ||||| | | |||||| Sbjct 3612617 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCAGAAGACTCGAC 3612675 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| || || || || ||||||||||| Sbjct 3612676 CTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | || || ||| || ||||| || ||| Sbjct 3613194 GTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 3613253 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 3613254 GCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 3613313 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | ||| || |||| || | || || || || || || Sbjct 3613314 ACGTTG-TCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGT 3613372 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 3613373 CTTCACGAAAATCTGCAT 3613390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500556305840