Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 223 4e-53 seq5 131 2e-25 >seq2 Length=4160336 Score = 223 bits (246), Expect = 4e-53 Identities = 1132/1781 (64%), Gaps = 45/1781 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| ||||| || ||| | | ||| ||||||||||| || |||||||| | Sbjct 4112166 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 4112107 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 ||| ||||||| | || | ||||| || | | |||| | || || | ||| Sbjct 4112106 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATGT 4112047 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | ||||| || || |||||| | || || || ||||| || || | Sbjct 4112046 GGATGTTGAGGGACTGGGACTGGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGATGA 4111987 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 |||| || |||||||| || |||| |||| ||| || || | ||||| | Sbjct 4111986 TTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGATGT 4111927 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || | || || || | | ||| || | | |||||| || Sbjct 4111926 TGGGGATGTTCTGCACGGATCCGT-TGTC--GGCCACGATTCGGTTCTTCATGGTCTCGT 4111870 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878 ||| ||||||| || || |||| | | ||| | ||||||| ||| Sbjct 4111869 TCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGG----TTGACAATCTGGAAC 4111814 Query 115879 TCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 ||||| || || |||| ||| || ||||||| ||||| ||||| |||||||| || Sbjct 4111813 TCACCAGCAAGCACTCGTCG-AGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 4111755 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 | || | || || | ||||| || || |||||||| |||| || || ||| || Sbjct 4111754 GAAGCCGAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCCACCAGCAGCGAGTTTCG 4111695 Query 115998 GAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 116057 | || | | | || ||||||| ||||||| || || |||| | Sbjct 4111694 CATTCCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCAG---AGCTCGGAGGG 4111638 Query 116058 ---CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 | | | ||||| |||||||| ||| ||| | ||| || || || |||| || || Sbjct 4111637 AGTCACGTTCCACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGT 4111578 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 ||| || | || || | |||| ||| | ||||| | ||| |||| || || Sbjct 4111577 CTCGTAAGCACCGTCCTCAAGGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAGAT 4111518 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA 116234 ||||| || || | || | ||||||||| ||||| || || | || ||| Sbjct 4111517 GGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCGAAGGGCAGTCGGAG 4111458 Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || || ||| || ||||| |||||||| || |||| || || |||| ||| || Sbjct 4111457 GGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTT 4111398 Query 116295 AGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||||| || ||| || || || | || | || || | || || || Sbjct 4111397 GGACTTCTTGGC---CTCAGGGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTT 4111341 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGA--GTCTC 116408 | | ||||| | || || || ||||| | | | || | | | | ||||| Sbjct 4111340 TCGCACAATCACCTTGGCAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTC 4111281 Query 116409 TTC---ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465 || | ||||| | | || || ||||| || ||||| || || |||| | |||||| Sbjct 4111280 GTCTCGAGTGACAAAGGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATC 4111221 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | || |||||| | ||| || ||||| || ||| ||| ||||| |||| ||| Sbjct 4111220 AGGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTT 4111161 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||| || |||||| ||| || || |||||||||||||| | || | || | ||| Sbjct 4111160 CTTTTGGTTGGACTTTCGGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGACTC 4111101 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTG-GCT 116643 || ||| | | ||||| | ||| | | || | ||| || | || ||| | || Sbjct 4111100 GGTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTG-GGCAGGGATGGT-TCGTCGACCT 4111043 Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG 116703 || ||||||| |||||||| ||| || || ||||| ||||| | || | Sbjct 4111042 CGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCACCGTAGACGTCATCG 4110983 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | ||||| ||| | | || ||| || |||| | Sbjct 4110982 AGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCC 4110923 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 ||||| ||||| ||||||||||| ||| ||| ||||| || || || || | Sbjct 4110922 ATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCCTCCTTA 4110863 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || |||| ||| | || || | || || ||||||| || ||||||||| Sbjct 4110862 CCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTAC 4110803 Query 116884 ACCGCGATTGACCC--CTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | | || | || | | || |||||| || || | || || ||| Sbjct 4110802 ATGGCAAAGGCTCCGGGTCGCTTGTTG-CCTCCCTGGTCGACGTATCGAGCGGTGTTGTT 4110744 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA 116999 | || || ||||| || | |||||| | || || || || || ||| || Sbjct 4110743 GTAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGA 4110684 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 | |||||| || | ||||||| || ||||||||| || || |||| ||||| | Sbjct 4110683 TCCGGTGGCTCGGATGTTGTGGATGGACAGACCAATACCTCCAGCGGACTTGGAGATGAG 4110624 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 || || | |||| || ||||||| || ||||| ||||| |||| | || || Sbjct 4110623 AGCACAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAG 4110564 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||| || |||||| || ||| || || || |||||| | ||||| || | ||||| Sbjct 4110563 GAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTG 4110504 Query 117180 GATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 | |||| ||| | || ||||| | | ||||||||| | | | || ||||| || | Sbjct 4110503 GGTGAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATGTTGTCGC 4110445 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 |||| ||||||| || || ||||| | ||| | |||||| Sbjct 4110444 CGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGGT 4110404 >seq5 Length=2767003 Score = 131 bits (144), Expect = 2e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||| ||||||||||| || || |||||| || || Sbjct 1872440 GCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCG 1872381 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 1872380 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATG 1872321 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AA 127698 ||||| || || || || | || |||||| |||||| || | | || | | Sbjct 1872320 CCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGG-TCGACTCGTCGTCGGAGAT 1872262 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| | |||||| | ||||| |||| ||| || |||| ||||| ||| || Sbjct 1872261 CCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506885577560