Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 255 9e-63 seq2 221 2e-52 seq3 138 2e-27 >seq5 Length=2767003 Score = 255 bits (282), Expect = 9e-63 Identities = 581/864 (67%), Gaps = 15/864 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | ||||| ||||||||| |||||||||||||| ||| || || Sbjct 1872735 CTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTT 1872676 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAAT-CCGAGAGCCGCCA 159746 |||||||| |||| ||||| | || ||| ||| ||| | |||||||| ||| Sbjct 1872675 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTT-GGAGTTGCCGAGAGCAACCA 1872617 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || ||||| || ||||| ||||| ||| ||| || || |||| Sbjct 1872616 GCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCA 1872557 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | ||| || || || | ||| ||||||| ||| || | || || ||| |||| Sbjct 1872556 GTCCGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCG---ACAA 1872500 Query 159867 TC---TGCGAGACACGTTCGTACCCCGGCTTGCCCAAAAT-GTGGTCCTTAAACAGGAGG 159922 || | | |||| || | | || | | | | ||| | || || || Sbjct 1872499 TCACGTCCTCGACA--ATCTT--CTTGGAGGGTCGGTTCTCGAGGTGCGAGAAGAGCAGA 1872444 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||||||| |||||| |||||||| || ||||||| ||||||||| | | ||||| Sbjct 1872443 CAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1872384 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| || ||| |||||||| || |||| || || | ||| || ||| Sbjct 1872383 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAG 1872324 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| ||||| ||||| || | |||| ||| ||||| | | | | ||| | Sbjct 1872323 ATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCGTCGTCGGAG 1872264 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162 ||||| | ||||| || |||||||| |||||| || ||| ||||| |||||| Sbjct 1872263 ATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 1872204 Query 160163 AACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACAT 160221 |||| | || | ||||||| |||||||| || | |||||| ||||||| | Sbjct 1872203 AACAGGTAGGTTC-GCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGT 1872145 Query 160222 TTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA 160281 ||| | ||| | || || || ||||| ||| |||||| | | ||||| | Sbjct 1872144 TTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGAC 1872085 Query 160282 CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGC 160341 ||||||||| | ||| | | |||| || | || || | || |||| || || Sbjct 1872084 CTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCATCGGAAGCAGC 1872025 Query 160342 AAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCA 160401 |||||| |||| |||||| |||||||| | |||||| |||||||| | || ||||| Sbjct 1872024 AAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCCGGTTCTCCCA 1871965 Query 160402 GTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGT 160461 || || ||| | | | | ||||| ||| || ||| |||| | ||||| || | Sbjct 1871964 GTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTT 1871905 Query 160462 TTTGTACATGGCCCAGATGGCGTG 160485 |||||||| |||||| |||| Sbjct 1871904 CTTGTACATCTGCCAGATCTCGTG 1871881 >seq2 Length=4160336 Score = 221 bits (244), Expect = 2e-52 Identities = 341/480 (71%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | | |||| | || ||| ||| |||||||| |||||||| || Sbjct 4112167 GTGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGA 4112108 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||||| || |||| || | ||||||| ||| Sbjct 4112107 CCCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATG 4112048 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 || ||||| || |||||| ||||| ||||| || | || || || ||||| | ||| Sbjct 4112047 TGGATGTTGAGGGACTGGGACTGGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGATG 4111988 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || |||||| |||||||||||||| |||||| ||| ||| || | | || || | Sbjct 4111987 ATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGATG 4111928 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || ||||||||||||| | || || || | ||||| | Sbjct 4111927 T-TGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCGT- 4111870 Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||||| | ||||||| | ||| ||| | ||| |||||||| ||||| || | Sbjct 4111869 --TCCACA-GACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACT 4111813 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || | ||||| | ||| | | | | |||| |||| | || ||||| ||||||| Sbjct 4111812 CACCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGA 4111753 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 ||||| |||||||| ||| || || |||||||| |||| ||||| ||||| |||| Sbjct 4111752 AGCCGAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCCACCAGCAGCGAGTTTCGCA 4111693 >seq3 Length=2943663 Score = 138 bits (152), Expect = 2e-27 Identities = 333/499 (67%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| || |||||||| ||||| | || || | | ||| |||||||| Sbjct 1830942 CGTCTTGTCGACTGTGAACTGGATGGCTGCTGCTGCGGGGGGCGTACGCAGGTAGTACAT 1831001 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| || || |||||| | | ||| |||| | ||||||| | | ||||| ||| Sbjct 1831002 GCCTGTTTTGAGGCCCATTTTCCAGCCGTGGAAATGCATGGCTGTGATTTTGC---CGTG 1831058 Query 203956 GGGG---TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 || | ||| |||| ||||| || ||||| ||||| ||| | ||||| ||| | Sbjct 1831059 GGTGATTTCGCGCATGAAGATGTTGAGCGACTGCGACTGGTCAATGTAGGGCGCTCGAGC 1831118 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | ||| ||| || | || ||||| | || | ||||| | | Sbjct 1831119 AGCTGCCATGTCGATGATGCTCCGGGCCTTGATTTCCCAGGCGGTTCGGTACACGGCCCG 1831178 Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 | ||| || || | ||| | | ||| ||||||||||||||| || | || Sbjct 1831179 GATGTTTTCGGGAA--TCTGGGTGATGGACTGGATCGAGCCGTTGTCGTGGATGATTCGG 1831236 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 | || ||| ||| ||||||||||| | |||| || ||| || ||| | ||||| Sbjct 1831237 TTTTTCATCTGCTCGTTCCACATGCCCAGCTTGATGAGATCCTTCATCAGCCAGTGGTTG 1831296 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | || | || || || | | || | || | | | |||| |||| |||| ||| Sbjct 1831297 ACGACGAGGAACTCGCCTGCTTGAACTCGACGAAGGTAGATGTTGGAGGTGTATGGCTCG 1831356 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||||| ||||| |||||||| ||| ||||| ||||| ||||||| ||| Sbjct 1831357 AAACACTCGTTGTGGCCGAGAATCTGAGACGTGGAAGCCGTAGGCATAGGAGCCACCAGC 1831416 Query 204311 AGGGAGTTGCGCACACCGT 204329 || |||||||||| ||||| Sbjct 1831417 AGCGAGTTGCGCATACCGT 1831435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154792482960