Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq1 134 3e-26 >seq2 Length=4160336 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 1075044 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 1074985 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 1074984 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 1074925 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 1074924 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1074865 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || || |||||||| || Sbjct 1074864 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTG 1074826 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| |||||||||||| ||||| |||||||| |||| ||||||||||| | ||| Sbjct 1736799 TCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 1736858 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| |||||||| || || |||||||||||||| ||| || Sbjct 1736859 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCC 1736918 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 1736919 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAG 1736978 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 1736979 GGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 1737017 >seq1 Length=4858313 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||||| || |||||||| |||||||| |||| ||||||||| | || ||| Sbjct 3612730 TCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 3612789 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||| || |||||||| || |||||||||||||| ||| || Sbjct 3612790 TCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACC 3612849 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| ||| || | ||| || | | || || || | Sbjct 3612850 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAG 3612909 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| || || Sbjct 3612910 GGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTG 3612948 Score = 134 bits (148), Expect = 3e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || || |||||||| |||||||| |||| ||||||||| | || ||| Sbjct 3613397 TCGAAGTCGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 3613456 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||| |||||||| ||||| |||||||||||||| |||||| Sbjct 3613457 TCGTCCGTCCTCGAGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCC 3613516 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||||||||| ||| ||| |||| |||||| Sbjct 3613517 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 3613558 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || |||||||||||||| || ||||| |||| ||||||||| | | || Sbjct 3612502 TCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 3612561 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || |||||||| ||||||||||| || |||||||||||||| || || Sbjct 3612562 TCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 3612621 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| ||||| | | || || || | Sbjct 3612622 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACCTCGAG 3612681 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| ||||| || Sbjct 3612682 GGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTG 3612720 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 ||||| |||||||| |||| ||||||||||| | || | ||||| || |||||||| Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || ||||| ||||| |||||||||||||| ||| || || ||||| ||||| | Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || ||| || | ||| || | | || || || | ||||| ||||| || ||||| Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370 Query 199610 GTTTTCACAAAAATTTG 199626 || ||||| ||||| || Sbjct 3613371 GTCTTCACGAAAATCTG 3613387 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| || |||||||| |||||| | || || ||| | ||| || |||| |||||| |||| Sbjct 3613493 ACTCATTTTCGCCGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAACATCCA 3613434 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||| ||||||||||| || || ||| | |||||||| Sbjct 3613433 GAAGGAGTCTACTCTCCATCTGGTTCTCCGACTTCGA 3613397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920980697747