Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 399 2e-106 seq2 123 2e-23 seq1 120 3e-22 >seq5 Length=2767003 Score = 399 bits (442), Expect = 2e-106 Identities = 652/928 (70%), Gaps = 17/928 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||| |||| ||||| || || || || || || | Sbjct 1872747 CATGACGCCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 1872688 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCC 132707 || || ||| | ||| || || |||||||||| | ||||||| ||||| |||| Sbjct 1872687 CAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCC 1872628 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || | || ||||| | |||||| || ||||| ||||| || ||||| | || || Sbjct 1872627 GAG-AG--CAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGC 1872571 Query 132767 AATTAAGTCCCAGCAGAC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 || | ||| ||||| | ||| ||||| || ||||| || || |||||||| | Sbjct 1872570 G-TTCATTCCGAGCAGTCCGCAG-GGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCA 1872513 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || ||| | | ||| || | | | || || | | | | ||| | Sbjct 1872512 ACGGCCTCGACAATCACGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTGCGAG 1872453 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | || || ||||||||| |||| |||||||| | ||| ||||| |||||| | Sbjct 1872452 AAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAG 1872393 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | |||||||||||| || || || |||||||| || |||| |||||| ||| Sbjct 1872392 AAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCG 1872333 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || ||||||| |||||||||||| || || || | ||| |||||||| || || | || Sbjct 1872332 GAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGCCGCTCGCCAAAGGTCGACTCG 1872273 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 | | || |||||| |||||||| |||||||| | |||| ||| || || || ||| Sbjct 1872272 TCGTCGGAGATCCACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCG 1872213 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGG 133183 |||||||| ||| | | || ||| || | || | | ||| |||||||| || Sbjct 1872212 ATGGCGTTGAAC--AGGTAGGTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATCAGCA 1872155 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| ||| |||||||||| | ||||||||| ||| || |||||||| |||||| | Sbjct 1872154 GCGAGTACGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGG 1872095 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| |||||||| || | ||| ||||| ||||| || ||||| || || || | Sbjct 1872094 CCTCGGGGACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTCACAATACCAT 1872035 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 || || || || ||||||||||||||| |||||| ||||||| || ||| | | Sbjct 1872034 CGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCGTTGTTGAGCC 1871975 Query 133364 G---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | ||||||||||| | |||||||| || || | ||||||| ||||||| || || | Sbjct 1871974 GGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTCCAGAAAGAAG 1871915 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 ||||||| || |||||||| ||| || || || || ||||| || | |||||||| Sbjct 1871914 CCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAGAGCACAAACC 1871855 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||||| |||| || | ||||||||| Sbjct 1871854 GGCGGTGGTTCTCCTTGAGCAGCGGCTC 1871827 >seq2 Length=4160336 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| ||||||||| |||| || ||| | ||| Sbjct 1737019 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCG 1736960 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 1736959 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1736901 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 1736900 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 1736841 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| | || ||||| Sbjct 1736840 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTGCG 1736806 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| | || || ||| | Sbjct 1074821 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 1074880 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 1074881 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1074939 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 1074940 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1074999 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 1075000 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1075037 >seq1 Length=4858313 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| |||||| | | Sbjct 3612723 ATGCAGATTTTCGTGAAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCT 3612664 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 3612663 GACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 3612605 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || |||| || |||||| ||||||||| Sbjct 3612604 GCAGCGACTTATCTTCGCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAA 3612545 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| |||||| | || || || | ||||| || | |||| |||| Sbjct 3612544 CATCCAGAAGGAATCCACTCTCCACCTTGTGCTCCGACTCCGAGGTGGCC 3612495 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| |||| || ||| || || Sbjct 3613390 ATGCAGATTTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 3613331 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 3613330 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 3613272 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || || | || |||||| |||||||| Sbjct 3613271 GCAGCGACTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCTGACTACAA 3613212 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 3613211 CATCCAGAAGGA 3613200 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| || || Sbjct 3612951 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCC 3612892 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| |||||| | ||||| Sbjct 3612891 GATACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 3612833 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || |||| || || || ||||||||| Sbjct 3612832 GCAGCGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAA 3612773 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| |||| || || Sbjct 3612772 CATCCAGAAGGAGTCTACTCTCCATCTGGTCCTCCG 3612737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| ||||||| ||| || || ||||| || Sbjct 3613525 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTCGCCGGTAAGCAGCTCGAG 3613466 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || || ||||||||||||||| ||||| | || || ||| |||| || Sbjct 3613465 GACGGACGAACTCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTTCTC 3613406 Query 38457 CG 38458 || Sbjct 3613405 CG 3613404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172543661440