Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq5 132 6e-26 seq1 122 1e-22 >seq2 Length=4160336 Score = 215 bits (238), Expect = 6e-51 Identities = 1171/1838 (64%), Gaps = 87/1838 (5%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || |||||||| || |||||||| |||||| |||| | ||||| |||| | Sbjct 4112134 CGCAGGTAGTACATACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAAGTG 4112075 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || ||| | || || || || | ||| | ||||| ||||| || ||||| Sbjct 4112074 AGCTTGCCCATGGTGGGGTCCTTGATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 4112015 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 | || || || ||||| |||||||| | ||| || ||| ||||| || |||||| Sbjct 4112014 GGGGATCGGTCGGCAGCCATCTCGATGATTCGCTTCTGAGAAATCTCCCACACGGTCTTG 4111955 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 |||| | |||||| || | ||| |||| |||||| || | || || | | Sbjct 4111954 TACAGGTCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCC 4111895 Query 109648 ACCATGAGATCCTTCAT---CTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACA 109704 || || | | |||||| ||| ||| || ||||| |||| || || | | Sbjct 4111894 ACGATTCGGTTCTTCATGGTCTCGTTCCAC---AGACCAACCTCAACCAGGTCCTTGAGC 4111838 Query 109705 AGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTC 109764 || |||||| | || ||||||||||| ||||| ||| ||||| | Sbjct 4111837 AGCCAGGGGTTGACAATCTGGAACTCACCAGCAAGCACTCGTCGAGAGTAAATGTTGGAG 4111778 Query 109765 GTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATG 109824 |||||||| ||||| ||||| ||| ||| || || || | ||||||||| || |||||| Sbjct 4111777 GTGTAGGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAAGTGGAAGCAGTAGGCATG 4111718 Query 109825 GGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG----C 109880 || |||| || || |||||| | || || || | | | || ||| | Sbjct 4111717 GGGGCCACCAGCAGCGAGTTTCGCATTCCAGTCTTCATGATCTTG----GCCTTGAGATC 4111662 Query 109881 GTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 |||||| || | || | | | |||| | | ||||| || || || | Sbjct 4111661 GTCCCACTCCCA--GAGCTCGGAGGG-AGTCACG---TTCCACAGGTCAAACTGCAGGTC 4111608 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG-ACC--CCTCAACCTCGGCCAA 109997 ||||| | |||||||| |||| ||| ||||||| | ||| |||||| ||||| Sbjct 4111607 ACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAAGCACCGTCCTCAAG---GGCCAT 4111551 Query 109998 CTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG-------AGCAT 110050 |||| | |||||||| | || | || || || ||||| || || || ||| | Sbjct 4111550 CTCGTAAGAAGCCTCAACGGCACCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC-T 4111492 Query 110051 TCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110 || || | ||| || | |||||||| || | || || ||| || | Sbjct 4111491 TCTTG------GCCTCCTCGGACTCGAAGGGCAGTCGGAGGGCCATGAAGGTATCAGCCA 4111438 Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT- 110169 ||||||| ||||| ||| ||||||| || || |||||| || | || | | || Sbjct 4111437 GACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTGGA-CTTCTTG--GCCTCAG 4111381 Query 110170 --ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTG- 110226 || ||||| |||| ||||| |||| ||||| || ||| |||| || | || Sbjct 4111380 GGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTT--TCG-CACAATCACCTTGG 4111324 Query 110227 --ATTTCATGGAGTTTGTCGTAATCG---AACGTTTTCGTCTCCTT---ATTGACATATT 110278 || || || || || | | | ||| || | || ||||| | | ||||| | Sbjct 4111323 CAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTCGTCTCGAGTGACAAAGG 4111264 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 |||| ||||| || || || || ||||| |||| ||| || | ||| || | Sbjct 4111263 TGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGAAGAGTACTCGA 4111204 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 ||| || ||||| ||||||| ||| ||| ||||| |||||| || || || || Sbjct 4111203 CAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTTCTTTTGGTTGGACTTTC 4111144 Query 110399 AGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA 110458 |||||| || ||||| ||||||||| | ||| |||| | || ||||| | | |||| Sbjct 4111143 GGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGACTCGGTCTGGCAGTCCAGAA 4111084 Query 110459 TGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTT-AGCGAGACCTTCCTCCTCGTA 110516 || | ||| | | || | ||| |||| ||| ||| | | | || |||| |||||| Sbjct 4111083 TGTGGTACCACAGCTTCTG-GGCAGGGATGGTT-CGTCGACCTCGGCCCTCCTTCTCGTA 4111026 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 || ||||| | || || || | ||||| || ||| || || || || Sbjct 4111025 CTGCTCGTACAGCTGCTTGAACTCGTCACCGTAGACGTCATCGAGGCCAGGGCACTCGTT 4110966 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 ||| || | ||| | ||| | | || ||| || | || |||||||||||| || || Sbjct 4110965 GGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGAT 4110906 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | ||| ||| || || ||| || ||| || | ||| ||||| || || Sbjct 4110905 CCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCCTCCTTACCGTGGTTCTTTCGCAG 4110846 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC--- 110753 ||| | || || | || || |||||| || || || || | || | || ||| Sbjct 4110845 CTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGG 4110786 Query 110754 ---CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 ||| | | || |||||| || || || || ||| ||| |||| | ||||| Sbjct 4110785 TCGCTT--GTTG-CCTCCCTGGTCGACGTATCGAGCGGTGTTGTTGTAGACACGCAGCAT 4110729 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAAT 110870 || | || || | ||| ||| || || || ||| ||| |||| || || Sbjct 4110728 GGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGATCCGGTGGCTCGGAT 4110669 Query 110871 GTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGA 110929 || |||||| || ||||||||| || || |||| || | |||| | ||| ||| Sbjct 4110668 GTTGTGGATGGACAGACCAATACCTCCAGCGGACTTGGAGATGAGAGCACAAGTCT-TGA 4110610 Query 110930 GTGTACCATAAATACCATCAATCGAATCTGCCT---TGTTGGCAATTAGAAAGCAAGAAG 110986 | || | || || || || || || || ||| ||||| || || || || || | Sbjct 4110609 GGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACA---AGGAAACACGACG 4110553 Query 110987 ACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGAC 111046 ||||||| || | || ||||| || ||| | || ||||| | || || |||| || Sbjct 4110552 ACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAA-GTAC 4110494 Query 111047 CT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCA 111105 | || ||||| | |||||| || || | || || | | | ||||| ||||| Sbjct 4110493 TTCTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATGTTGTCGCCGTGGATACCG 4110434 Query 111106 ATGGCAACTCGCATGAACATATATTGAGGCGTTTCG--ATTAGCTTTCCATCAACACGCT 111163 | | |||||||||| ||| | || || ||| | ||| || | || ||| Sbjct 4110433 ACAGACACTCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGC--GCCGTTGACTCGCA 4110376 Query 111164 GAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | ||||| ||| ||| |||||||||| |||||||| Sbjct 4110375 GCAGGTAGGCTC-GCTCCAGGGTCTTGAAGCCAAAGTA 4110339 >seq5 Length=2767003 Score = 132 bits (146), Expect = 6e-26 Identities = 360/541 (67%), Gaps = 25/541 (5%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||| ||||| ||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 1872728 TAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATG 1872669 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTT----GACCAACTTGTTTCAGA 119321 ||||| || || || ||||||| ||| |||| | | || |||| ||| Sbjct 1872668 AAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAAC------CAGC 1872615 Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 ||||| |||| |||| |||| || || | | |||| | | ||||| || | || Sbjct 1872614 AGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGT 1872555 Query 119382 TTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTT---TCACG 119438 || || ||||| ||| | ||| | || |||||| | || || || ||||| Sbjct 1872554 CCGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACG 1872495 Query 119439 ATGGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTAC-GGC 119497 | ||| |||| | || ||| ||| ||| || | | | || ||| Sbjct 1872494 TCCTCGACAATC--TTCT-TGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGC 1872439 Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 ||| || || || || || || || ||||||||||| || |||| || || || Sbjct 1872438 AAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGG 1872379 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 |||||| |||| ||||| ||||| ||||||| || || || ||||||||||| Sbjct 1872378 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCC 1872319 Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC-TTGTC---GAACC 119673 ||| || ||| || |||| || ||||| || ||||||||| | | ||| || || Sbjct 1872318 CTCGACGGCGGCAAAGGCGATCAGCCGCTC-GCCAAAGGTCGACTCGTCGTCGGAGATCC 1872260 Query 119674 ACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAA 119733 ||||||| ||||||| |||||| || |||||||||| || | |||||| | ||| | Sbjct 1872259 ACTTGAGCGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACA 1872200 Query 119734 G 119734 | Sbjct 1872199 G 1872199 >seq1 Length=4858313 Score = 122 bits (134), Expect = 1e-22 Identities = 268/392 (68%), Gaps = 25/392 (6%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG-- 11649 ||| |||||||| || || |||||||||| ||| || ||||| |||||| | Sbjct 463900 GAAGCCGTCCATCTCGACCAGCAGCTGGTTGAGAGTCGACTCCCGCTCGTCGTTGCCGCC 463841 Query 11650 GGCATAC---CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 | || || | ||||| |||||||| || | ||||||||||| |||| ||| | Sbjct 463840 GCCAAACTTGCCGCTGCCT--CGCTTCTTTCCAATGGCGTCAATCTCGTCGACGAA---G 463786 Query 11707 ATACACGGTTGGTTGGCA-----CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTC 11761 ||| | || || | || || ||||| | || || || || || ||| ||||| Sbjct 463785 ATA-ATGGCAGGG-GCCATCTTTCGAGCCTGCGCAAACAGGTCTCGAACTCGCGACGCTC 463728 Query 11762 CAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTA 11820 | || || || ||||| || ||||| | | |||| ||| || | |||||| ||| | Sbjct 463727 CGACTCCAACAAACATTTCCACGAACTCAGATCCAGA-CACGGACAGGAAGGGCACACCA 463669 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 | |||||||||| | || || | || ||||| || ||||| || | |||| ||| Sbjct 463668 GCCTCACCAGCGGTAGCCTTGGCAATCAGCGTCTTTCCGGTACCGGGGGGTCCAGACAGA 463609 Query 11881 AGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937 | ||| || ||||||||||||||||| || |||| | || || ||||||||| Sbjct 463608 ATGGCTCCTCGGGGGATCTTGGCACCCAGACGCTCAAACT---TCTGGGGGTTCTTGAGG 463552 Query 11938 AAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || ||||| |||| | ||||||||||| Sbjct 463551 AACCGCACAAACTCCATGATCTCCTCCTTGGC 463520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975698149800