Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 246 4e-60 seq5 132 6e-26 >seq2 Length=4160336 Score = 246 bits (272), Expect = 4e-60 Identities = 1145/1790 (64%), Gaps = 63/1790 (4%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 ||||||| || ||| || ||| | | ||| || |||||||| ||||||||||| | Sbjct 4112166 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCGGTCTTGAGAC 4112107 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | | ||||| |||| | ||||| |||| ||||||| ||| || || | ||| Sbjct 4112106 CCTTCTTCCAGCCGTAGAAGTGCATGGAAGTGAGCTTGCCCATGGTGGGGTCCTTGATGT 4112047 Query 105678 AAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735 | || | ||| |||| ||||||||||| | || | || ||||| || || Sbjct 4112046 GGATGTTGAGGGACTGGGACT--GGTCAATGAAGGGGGATCGGTCGGCAGCCATCTCGAT 4111989 Query 105736 GACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGAT 105795 || |||| || |||||||| || ||| || | |||||| || | ||||| Sbjct 4111988 GATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGAT 4111929 Query 105796 ATCTGAGATATTTTGAATTGAACCCC---CCGCCTTGACCATGAGATCCTTCATATCCTT 105852 | | ||| || || | || || | ||| || || | | |||||| || Sbjct 4111928 GTTGGGGATGTTCTGCACGGATCCGTTGTCGGCC---ACGATTCGGTTCTTCATGGTCTC 4111872 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912 | ||| ||||||| || || || |||| || |||||||||| ||||| Sbjct 4111871 GTTCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACTC 4111812 Query 105913 TCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTAT 105971 || || || || || ||| || ||||| | |||||||| || ||||| || || Sbjct 4111811 ACCAGCAAGCACTCGTCG-AGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGA 4111753 Query 105972 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 106031 || | || || | ||||| || || ||||| || |||| || || ||| || | Sbjct 4111752 AGCCGAGAATCTGAGAAGTGGAAGCAGTAGGCATGGGGGCCACCAGCAGCGAGTTTCGCA 4111693 Query 106032 GACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT---- 106087 || | | | |||| |||||||| | ||||| || || |||| || Sbjct 4111692 TTCCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCACTCCCAG---AGCTCGGAGGGAG 4111636 Query 106088 TCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTC 106147 |||| |||| ||| ||||| || || | || | ||| | ||||| |||| || ||| Sbjct 4111635 TCACGTTCC-ACAGGTCAAACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTC 4111577 Query 106148 TCATAGGAACCTTGGGCTTCA---GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATAC 106204 || || | ||| | | ||| |||| || | ||||| | || |||| || Sbjct 4111576 TCGTAAGCACCGT---CCTCAAGGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAG 4111520 Query 106205 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG-CG 106263 ||||| || ||||| | || | || |||||| || || || || || | | || || Sbjct 4111519 ATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTCGAAGG-GCAGTCG 4111461 Query 106264 GCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCAT 106323 | || || ||| || ||||| || ||||||| | |||| |||| ||||||||| Sbjct 4111460 GAGGGCCATGAAGGTATCAGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCAT 4111401 Query 106324 ATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 106380 || ||||| || |||| || || || | |||| |||||||| ||| || Sbjct 4111400 GTTGGACTTCTTGGC---CTCAGGGACAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAG 4111344 Query 106381 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA---AAAGTGCGAGT 106437 ||| || | ||| | || || || || || | | || || | | || Sbjct 4111343 GTTTCGCACAATCACCTTGGCAATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGT 4111284 Query 106438 CTCTTC---ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 ||| || | ||||| | | || || ||||| || |||| ||||| ||||| ||| Sbjct 4111283 CTCGTCTCGAGTGACAAAGGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTC 4111224 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||| | | |||||| | ||| || ||||| ||||||| ||| || || |||| Sbjct 4111223 ATCAGGAGAAGAGTACTCGACAATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAG 4111164 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 ||||||||||| |||| |||||| || ||||||||||||||| |||| | || | Sbjct 4111163 GTTCTTTTGGTTGGACTTTCGGTTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGA 4111104 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG--CGTT 106671 ||| ||||| | | ||||| | ||||| | || | ||| || |||| ||| Sbjct 4111103 CTCGGTCTGGCAGTCCAGAATGTGGTACCACAGCTTCTG-GGCAGG---GATGGTTCGTC 4111048 Query 106672 GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCCTCACCCACCGCG 106729 | || || |||||| |||||||| ||| || |||| ||||| ||||| || Sbjct 4111047 GACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTT-GAACTCGTCACCGTAGACG 4110989 Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACC 106789 || ||| || || || || || || | |||| ||| | | || ||| || Sbjct 4110988 TCATCGAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACT 4110929 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 106849 |||| |||||| ||||| || ||||| || | || ||||||| || ||| Sbjct 4110928 CGCTCCATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCC 4110869 Query 106850 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 106909 || | ||| ||||| ||| | ||| |||||| | || || ||||||| ||||| Sbjct 4110868 TCCTTACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCC 4110809 Query 106910 AGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGC 106962 || || | || | | ||| ||| | | | ||| || | || || || || Sbjct 4110808 AGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCC----TGGTCGACGTATCGAGC 4110753 Query 106963 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 107022 ||| ||| | || || ||||| || | ||||| | || ||| || || || Sbjct 4110752 GGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGTTCCGGC 4110693 Query 107023 AATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 107082 ||| ||| |||||| | | |||||| || |||||||| ||||| |||| Sbjct 4110692 AATGTAGGATCCGGTGGCTCGGATGTTGTGGATGGACAGACCAATACCTCCAGCGGACTT 4110633 Query 107083 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 107142 ||||| | ||||| | | || || | ||||| |||| ||| ||||| ||||| | Sbjct 4110632 GGAGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCAT 4110573 Query 107143 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 107202 | || |||||| || |||||||| || || || || || ||| | ||||| || Sbjct 4110572 GTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGG 4110513 Query 107203 TGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAA 107261 | ||||| |||| ||| | || ||||| | || ||| ||||| | | | ||| Sbjct 4110512 GGAAGCGTGGGTGAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAA 4110454 Query 107262 TGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||| || |||||||| |||| | ||| ||||| | ||| | |||||| Sbjct 4110453 TGTTGTCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGGT 4110404 >seq5 Length=2767003 Score = 132 bits (146), Expect = 6e-26 Identities = 346/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || |||||||| |||||||||||||| || | || ||||| ||||| ||||| || Sbjct 1872719 ACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAGCGAGATGTTCTCCATGAAGTCGAAG 1872660 Query 117055 GGATTCTTCGCGTTCCAAA---TGG-GTGGC--ACCCCAACTTGTTTGAGGAGACGATCC 117108 || || | | ||| | | ||| || || | |||| || ||||| || Sbjct 1872659 GGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGAGAGCAACC------AGCAGACGGTCG 1872606 Query 117109 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGG 117168 | ||| |||||||||||| | |||| || | |||||| |||| || || || Sbjct 1872605 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATTCCGAGCAGTCCGCAGGGC 1872546 Query 117169 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 117228 || ||||| | |||| | | ||| || |||| ||||| | | | | | || | Sbjct 1872545 AGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCTCGACAATCACGTCCTCGACA 1872486 Query 117229 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 117287 | | | | ||||| || | | | || | ||||||| |||||| || ||| Sbjct 1872485 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGCGAGAAGAGCAGACAGGCAAAGTCGGTGTG 1872427 Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347 |||||||| |||||||| || || || || |||||| ||||| ||||||||||| || Sbjct 1872426 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 1872367 Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 1872366 CTTCTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 1872307 Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466 ||| || | || |||||| | |||| ||| | | || | | ||| || | |||| Sbjct 1872306 AAAGGCGATCAGCCGCTCGCCAAAGG-TCGACTCGTCGTCGGAGATCCACTTGAGCGCCC 1872248 Query 117467 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | |||||||||| || || || | || | |||||| Sbjct 1872247 AGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 1872208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980497634840