Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 203 3e-47 seq3 87.8 1e-12 >seq6 Length=2636511 Score = 203 bits (224), Expect = 3e-47 Identities = 410/605 (68%), Gaps = 25/605 (4%) Strand=Plus/Plus Query 29799 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 29858 |||||| | |||||||||||| ||| || ||||||||||||| ||| |||| || ||| Sbjct 2518929 CTTCAGAGCGTCCACGTGATCCTTGTACACATGAGCGTCTCCCATGGTATGGATAAGCTC 2518988 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 ||| || || |||| || || || ||||| || | |||| ||| ||| || Sbjct 2518989 TCCACAGTCCAGATCGGTCACCTGGGCAATCATTCGAGTCAACAGAGCATAGGAGGCAAT 2519048 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 ||| ||||| || || || |||| || | |||| |||||| ||||||||||| ||| Sbjct 2519049 GTTGAAGGGAACACCCAGACCCAGATCACATGACCGCTGGTACAGCTGACACGACAGCCG 2519108 Query 29979 TCCGTCGCTCA----------------CGTAAAACTGACACATGGTGTGGCACGGAGGAA 30022 ||| ||||||| |||| ||||| || | ||||||| ||||||| Sbjct 2519109 TCC-TCGCTCAGAGTTCTTGTACGACACGTAGAACTGGCAGAACATGTGGCAGGGAGGAA 2519167 Query 30023 GAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTG 30082 ||||||| | || ||| |||||||||||| ||| ||||| || | ||| | | Sbjct 2519168 GAGCCATTTTGGACAGGTCAGCGGGGTTCCAGGCTGACAGAATGATTCGACGGTCCTGAG 2519227 Query 30083 GGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30139 ||||| | ||| || || ||| | |||| ||||||||||| ||| || | || Sbjct 2519228 GGTTGGTTTTGAGAGTGTGGATCAC--CTGTTTG-AGCTGATCCACACCCTGGCCAGTGT 2519284 Query 30140 AGTCTGCCCTCATG-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30198 | |||| ||| ||| |||| || ||||| ||||| | ||| ||||| || || || Sbjct 2519285 AATCTGTG-TCACAATCCTTGTATTCGGCTCCAAAATGACGCCATTGGAAGCCATATACA 2519343 Query 30199 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 30258 ||||||||||||||||| || || | || || ||| |||| ||| || |||| Sbjct 2519344 GGTCCCAGGTCTCCCTCACGTCTATGTCCCAATCCAGCCTTTTCCAGAAACTCCTTGGAT 2519403 Query 30259 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 30318 || || ||||||| || | | || ||| |||| ||| || || | || Sbjct 2519404 CCATTTCCGTCCCAAATATGAATGTTTTTTTCGCTCAGCTTCTTGCCGTCGGTACATCCG 2519463 Query 30319 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGG 30378 || ||||| || || ||||||| ||| | ||||||||| ||| || || | Sbjct 2519464 GCCACAAACCAGAGAAGTTCCTCCAAAACGCCTCGGTAAAAGACCCGCTTTGTGGTCAAC 2519523 Query 30379 AGGGG 30383 ||||| Sbjct 2519524 AGGGG 2519528 >seq3 Length=2943663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 ||||||||||| | || | ||| ||| | ||| |||| || ||||||||||| ||| Sbjct 394723 TCGTCAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCCTCGC 394782 Query 52075 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTT-- 52129 |||||| || ||||| || || | | ||| | ||| | ||||| ||||| || Sbjct 394783 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGACAC--GAGGATATGCCGTTTT 394839 Query 52130 CGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGAT 52189 || | || || | |||||||| |||||||||||||||||||| |||| || | || Sbjct 394840 CGGCC--GAGGGTATCGTGCCCGATATCATCATCAACCCCCACGCCATTCCCTCGCGTAT 394897 Query 52190 GACCGT 52195 |||||| Sbjct 394898 GACCGT 394903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617395818893