Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq1 98.7 8e-16 >seq2 Length=4160336 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || ||| ||| || || || ||||| ||||| || |||| Sbjct 1075040 AGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1074981 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||||||||| || || |||||||| || |||| ||||| |||||| Sbjct 1074980 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1074921 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||| | || Sbjct 1074920 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 1074861 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||||||||| Sbjct 1074860 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1074823 Score = 95.1 bits (104), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| ||||| ||| |||| |||| || | |||| Sbjct 1736818 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTCCTCGAGCTGC 1736877 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||| || ||||||||||| || |||| ||||| |||||||||||| Sbjct 1736878 TTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 1736927 >seq1 Length=4858313 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || ||| |||| |||| || Sbjct 3612743 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 3612802 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| || || || |||||||| || |||| ||||| ||||||||||| | Sbjct 3612803 AGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGA 3612862 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||| ||||| | || || || ||| Sbjct 3612863 ATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTT 3612922 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| |||||||| Sbjct 3612923 CCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || ||| |||| |||| || Sbjct 3613410 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 3613469 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||||||| || || |||||||| || |||| ||||| ||||||||||| | Sbjct 3613470 AGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 3613529 Query 48678 ATCTT 48682 ||||| Sbjct 3613530 ATCTT 3613534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| ||||| || |||| | || || | ||||||||| || || Sbjct 3613199 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 3613258 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||||||| || |||| ||||| |||||||||||| ||||| || || Sbjct 3613259 AATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 3613318 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || || || ||||| || | || || || Sbjct 3613319 GTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCAC 3613378 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 3613379 GAAAATCTGCAT 3613390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || |||| |||| || | |||||||||||| || Sbjct 3612533 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 3612592 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||||||| || |||| ||| | ||||||||||| ||||| || || Sbjct 3612593 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 3612652 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| ||||| | || || || ||||| || | || || || Sbjct 3612653 TCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACG 3612712 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 3612713 AAAATCTGCAT 3612723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937409650243