Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 145 5e-29 >seq1 Length=4858313 Score = 145 bits (160), Expect = 5e-29 Identities = 532/824 (65%), Gaps = 12/824 (1%) Strand=Plus/Minus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCAT 475421 || || |||||||| | ||||| |||||||| || ||||| || |||| || | || Sbjct 4779202 GCCACCGCTGGAGACACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC 4779143 Query 475422 GGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAAC--ATCTGCTAAAGC 475479 | |||| | || |||||| | || | || || | || || | | || | || Sbjct 4779142 --TTTGTTCAGGAGTTCAAGCGAAAGCACAAGAAGGACATCTCGACCAACCAGCGA--GC 4779087 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 | |||| || |||| || ||||| || || |||||| ||||||| ||| | |||| Sbjct 4779086 TCTCCGACGACTGCGAACCGCCTGTGAGCGAGCCAAGCGAACTCTTTCATCTTCCGCTCA 4779027 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAG 475599 ||| | ||||| | || ||||| | || || ||||||| | || || || | Sbjct 4779026 GACTTCCATTGAAATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCG 4778967 Query 475600 GGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACA 475659 || ||| || || | ||| |||||||| || || |||| || ||||| | Sbjct 4778966 AGCCCGATTCGAGGAGCTCTGTCAGGATCTCTTCCGAGGCACTCTTGAGCCTGTTGAGAA 4778907 Query 475660 AGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGG 475719 ||||| | || | || | ||||| | ||| | || ||||| ||||| || || Sbjct 4778906 GGTTCTGAAGGACGCCAAGATGGACAAGGCCTCTGTCAACGAGATTGTCCTTGTTGGTGG 4778847 Query 475720 TTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGT 475778 || || |||| || || | |||| | | | | | || || || || || Sbjct 4778846 CTCCACTCGAATCCCCAAGGTCC-AGAAGCTCGTGTCTGACTTCTTCAACGGCAAGGAGC 4778788 Query 475779 TAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 | || | | || |||||||| |||||||| || ||||||||||| || || |||| Sbjct 4778787 TGAACCGATCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCTGCTGTTCAGGCTGCTA 4778728 Query 475839 TTTTATCAGGTCAATCAGACGAGAA-ACTAAATAATATTGTACTTGTTGACGTAACTCCA 475897 || |||| ||| | | | ||| | | |||| | || ||||||| |||| Sbjct 4778727 TTCTATCTGGTGACACTTCCTCCTCTACTCAGGA-TATTCTGCTCCTTGACGTTGCTCCT 4778669 Query 475898 CTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACT 475957 || || | ||| | || || | ||| || ||||||| || || || | |||| | Sbjct 4778668 CTCTCTCTTGGTATCGAGACTGCTGGTGGTGTTATGACCAAGCTCATCCCCCGAAACTCG 4778609 Query 475958 CCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 |||| || ||| || || | || ||||| || |||| || || | ||| Sbjct 4778608 ACTATTCCCACCAAGAAGTCCGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGTGTT 4778549 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 ||||| |||| || ||||| || || || || || |||| ||||| | Sbjct 4778548 CTGATCCAGGTCTTCGAGGGTGAGCGAGCTCAGACCAAGGACAACAACATTCTTGGTAAG 4778489 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 ||| | ||| ||||||||||||||||| |||| |||||||| ||||| || || || Sbjct 4778488 TTTGAGCTTTCCGGTATTCCTCCTGCTCCTCGAGGTGTTCCTCAGATTGAGGTCACCTTC 4778429 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| | || || || |||||||| || || ||||| ||| || Sbjct 4778428 GATGTCGACGCCAACGGTATTCTCAACGTCTCTGCTGTTGAGAA 4778385 Score = 129 bits (142), Expect = 4e-24 Identities = 364/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || | | Sbjct 4779847 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCTAAC-GACAG 4779789 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||||| || || | ||| |||| || Sbjct 4779788 AGTCGAAATCATCGCCAATGACCAGGGAAACCGAACAACTCCCTCGTTTGTGGCTTTCAC 4779729 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || || || || |||| || Sbjct 4779728 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 4779669 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || |||||||||| || ||||| || | ||||| Sbjct 4779668 CACAGTCTTTGACGCCAAGCGACTGATTGGTCGAAAGTTTGACGACCCTGAGGTCCAGAA 4779609 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG- 474626 ||| || | || || ||| | || || ||||| || || | || || | Sbjct 4779608 TGACGCCAAGCACTTCCCCTTCAAGATCATCGATAAGGGTGGAAAGCCCAACATCGAGGT 4779549 Query 474627 -CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | | | ||||| || || || | || ||| |||| || || ||| || | Sbjct 4779548 CGAGTTTAAG--GGTGAGACCAAGGTCTTCACTCCCGAAGAAATCTCCTCTATGATTATC 4779491 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 | || ||||| | || || ||| ||| |||||| | || | || || || || Sbjct 4779490 ACAAAGATGAAGGAGACTGCTGAG-GGATACCTTGGAACTAAGGTGAACGACGCTGTCAT 4779432 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| || || || ||||||||||| || || || || || || || || || Sbjct 4779431 TACCGTTCCCGCTTACTTCAATGATTCTCAGCGACAGGCTACCAAGGACGCTGGTCTTAT 4779372 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| || ||| | || || || || || || || ||||| |||| || || Sbjct 4779371 TGCTGGTCTGAACGTTCAGAGAATCATCAACGAGCCTACCGCCGCCGCCATTGCCTACGG 4779312 Query 474865 TCTTGATAAGAA 474876 |||||| ||||| Sbjct 4779311 TCTTGACAAGAA 4779300 Score = 127 bits (140), Expect = 1e-23 Identities = 526/826 (64%), Gaps = 16/826 (2%) Strand=Plus/Plus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCAT 475421 || || |||||||| | ||||| |||||||| || ||||| || |||| || | || Sbjct 7054 GCCACCGCTGGAGACACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC 7113 Query 475422 GGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAAC--ATCTGCTAAAGC 475479 | |||| | || || ||| | || | || || | || || | | || | || Sbjct 7114 --TTTGTTCAGGAGTTYAAGCGAAAGCACAAGAAGGACATCTCGACCAACCAGCGA--GC 7169 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 | |||| || |||| |||||||| || ||||||||| |||| || ||| || |||| Sbjct 7170 TCTYCGACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACTCTCTCGTCTTCTGCTCA 7229 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAG 475599 || | ||||| | || ||||| | || || ||||||| | || || || | Sbjct 7230 GACCTCCATTGAAATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCG 7289 Query 475600 GGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACA 475659 || ||| || || | ||| ||||| || || || |||| || ||||| | Sbjct 7290 AGCCCGATTCGAGGAGCTCTGTCAGGATCTTTTCCGAGGCACTCTTGAGCCTGTTGAGAA 7349 Query 475660 AGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGG 475719 ||||| | || | || | ||||| | ||| | || ||||| ||||| || || Sbjct 7350 GGTTCTGAAGGACGCCAAGATGGACAAGGCCTCCGTCAACGAGATTGTCCTTGTTGGTGG 7409 Query 475720 TTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGT 475778 || || |||| || || | |||| | | | | | || || || || || Sbjct 7410 CTCCACTCGAATCCCCAAGGTCC-AGAAGCTCGTGTCTGACTTCTTCAACGGCAAGGAGC 7468 Query 475779 TAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 | || | | || |||||||| |||||||| || |||||||| || || || |||| Sbjct 7469 TGAACCGATCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCTGCYGTYCAGGCTGCTA 7528 Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 || | || ||| | || | | | | | ||| | || |||| || ||| Sbjct 7529 TTCTRTCTGGTGAYACTTCYTCCTCTACYC---AGGAYATTCTGCTCCTTGAYGTTGCTC 7585 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 | || || | ||| | || || | ||| || ||||||| || || || | |||| Sbjct 7586 CTCTCTCTCTTGGTATCGAGACTGCTGGTGGTGTTATGACCAAGCTCATCCCCCGAAACT 7645 Query 475956 CTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTG 476015 | |||| || ||| || || | || ||||| || |||| || || | || Sbjct 7646 CGACTATTCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGTG 7705 Query 476016 TAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAA 476075 | ||||| |||| || ||||| || || || || || |||| ||||| | Sbjct 7706 TTCTGATCCAGGTCTTCGAGGGTGAGCGAGCTCAGACCAAGGACAACAACATTCTTGGTA 7765 Query 476076 CTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTT 476135 ||| | ||| ||||| ||||||||||| |||| |||||||| ||||| || || | Sbjct 7766 AGTTTGAACTTTCTGGTATCCCTCCTGCTCCTCGAGGTGTTCCTCAGATTGAGGTCACCT 7825 Query 476136 TTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 | ||| | || || || |||||||| || ||| | ||| ||| || Sbjct 7826 TCGATGTCGACGCCAACGGTATTCTCAACGTTTCCGCTGTTGAGAA 7871 Score = 118 bits (130), Expect = 7e-21 Identities = 326/494 (66%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||||| || || | ||| | || || Sbjct 6468 AGTCGAAATCATCGCCAATGACCAGGGAAACCGAACAACTCCCTCGTTTGTGGCCTTCAC 6527 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || || || || |||| || Sbjct 6528 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCAGCCATGAACCCTGCAAA 6587 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || |||||||||| || ||||| ||| | ||||| Sbjct 6588 CACAGTCTTTGACGCCAAGCGACTGATTGGTCGAAAGTTTGACGATCCTGAGGTCCAGAA 6647 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG- 474626 ||| || | |||| ||| | || | | ||| || || | || || | Sbjct 6648 TGACGCCAAGCACTTCYCTTTCAAGATTATCGACAAGGCTGGAAAGCCCAACATCGAGGT 6707 Query 474627 -CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | | | || || || || ||| | || ||| |||| || || ||| || | Sbjct 6708 CGAGTTTAAG--GGCGAGACCAAGGTCTTTACTCCCGAAGAAATCTCCTCTATGATTCTC 6765 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA--CAAGAAGTAACTGATGCAGTA 474742 | || ||||| | || || ||| ||| |||||| |||| || | || || || Sbjct 6766 ACAAAGATGAAGGAGACTGCTGAG-GGATACCTTGGAACCAAG--GTGAACGACGCTGTC 6822 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 ||||| ||||| || || || ||||||||||| || || || || || || || || Sbjct 6823 ATTACCGTTCCCGCTTACTTCAATGATTCTCAGCGACAGGCTACCAAGGACGCTGGTCTT 6882 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||| || || | || ||||| || || || || ||||| |||| || Sbjct 6883 ATTGCTGGTCTGAACGTCCAGAGAATCATTAACGAGCCTACCGCCGCCGCCATTGCCTAC 6942 Query 474863 GGTCTTGATAAGAA 474876 || ||||| ||||| Sbjct 6943 GGCCTTGACAAGAA 6956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177441311068