Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 2e-12 seq6 86.0 2e-11 seq5 84.2 6e-11 >seq3 Length=2943663 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/325 (66%), Gaps = 3/325 (1%) Strand=Plus/Plus Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTA 155994 |||| | || ||||| ||||| ||||| | |||||| | ||||| || ||||| | Sbjct 1832228 CCCACAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCA 1832287 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTAC-- 156051 | | | ||| || |||||| | ||| ||||||||||| || ||||| || | Sbjct 1832288 GGTTCAGGAAATCGAGAATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGG 1832347 Query 156052 CATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | | | || |||||||| || |||||||| || || || ||||| || | ||||| | Sbjct 1832348 GACGCTTGTTTCCACCCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGG 1832407 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 ||| ||| ||| |||| | || | | || ||| | ||| | | | || Sbjct 1832408 GAACAATGCCACTGGACCTTCCTTGAGACCCAGTAATGATAGCACCCTTGGCCCTGATAT 1832467 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231 |||||||||| || || ||||| || | | ||| || ||||| || || ||| | | Sbjct 1832468 TATGAATATGCAGACCGATACCTCCAGCCGTTTTCGAGATTTGCGCACACGTCTTGAGGG 1832527 Query 156232 TATTGAAAATACCTTCAATAGAATC 156256 ||| | | || || || || || || Sbjct 1832528 TATCGTAGATTCCGTCGATGGAGTC 1832552 >seq6 Length=2636511 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || |||| | ||| | |||||| ||||||||||| || | ||| ||||||||||| ||| Sbjct 1396622 GCTCCGTAAGCAATAACACAATCTCGCTCCATTTCTCCCAGACGCAGACCACCATCTCGA 1396681 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||| |||| |||||| ||||||||| | |||||| || || ||| Sbjct 1396682 GATCGACCTTCGGTAGGCTGTCGAGTGAGAACCGCTCGAGGACCTCGGGGTCGAGCATGC 1396741 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||| || | ||||||||||| || ||||||| | ||| || | ||| ||| Sbjct 1396742 ATCTTGTCCATAACCATATGCTTCAGCTTCTGGTAGTAGATGGGGCCAAAGAAAATG 1396798 >seq5 Length=2767003 Score = 84.2 bits (92), Expect = 6e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 301825 ATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTA 301884 || |||||||||||| |||| ||||| | |||| || ||||| || || ||||| || Sbjct 273498 ATTCGGGGAACACCAAGGGTGACGTT---CATGGAAGCCACACCGGCGAAATGGAACGTC 273554 Query 301885 TTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||| | |||||| |||||||||||||| || || |||| Sbjct 273555 TTCAGAGTCATCTGAGTACCGGGCTCACCAATACTCTGGGCTCCAAT 273601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816826835817