Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 2e-12
seq6 86.0 2e-11
seq5 84.2 6e-11
>seq3
Length=2943663
Score = 89.7 bits (98), Expect = 2e-12
Identities = 216/325 (66%), Gaps = 3/325 (1%)
Strand=Plus/Plus
Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTA 155994
|||| | || ||||| ||||| ||||| | |||||| | ||||| || ||||| |
Sbjct 1832228 CCCACAATGCGTAGAACAGGTCTCTTGCTCTGTTCTCCTCTGCTCCGTGGTTTTTCCGCA 1832287
Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTAC-- 156051
| | | ||| || |||||| | ||| ||||||||||| || ||||| || |
Sbjct 1832288 GGTTCAGGAAATCGAGAATATCGGCATGCCAGGGCTCCAGATAGATGGCAAACGCTCCGG 1832347
Query 156052 CATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111
| | | || |||||||| || |||||||| || || || ||||| || | ||||| |
Sbjct 1832348 GACGCTTGTTTCCACCCTGGTCGACATACCGTGCGGTGTTGTTGAACACCCTGAGCATGG 1832407
Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171
||| ||| ||| |||| | || | | || ||| | ||| | | | ||
Sbjct 1832408 GAACAATGCCACTGGACCTTCCTTGAGACCCAGTAATGATAGCACCCTTGGCCCTGATAT 1832467
Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231
|||||||||| || || ||||| || | | ||| || ||||| || || ||| | |
Sbjct 1832468 TATGAATATGCAGACCGATACCTCCAGCCGTTTTCGAGATTTGCGCACACGTCTTGAGGG 1832527
Query 156232 TATTGAAAATACCTTCAATAGAATC 156256
||| | | || || || || || ||
Sbjct 1832528 TATCGTAGATTCCGTCGATGGAGTC 1832552
>seq6
Length=2636511
Score = 86.0 bits (94), Expect = 2e-11
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| |||| | ||| | |||||| ||||||||||| || | ||| ||||||||||| |||
Sbjct 1396622 GCTCCGTAAGCAATAACACAATCTCGCTCCATTTCTCCCAGACGCAGACCACCATCTCGA 1396681
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
| | ||| |||| |||||| ||||||||| | |||||| || || |||
Sbjct 1396682 GATCGACCTTCGGTAGGCTGTCGAGTGAGAACCGCTCGAGGACCTCGGGGTCGAGCATGC 1396741
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
||| || | ||||||||||| || ||||||| | ||| || | ||| |||
Sbjct 1396742 ATCTTGTCCATAACCATATGCTTCAGCTTCTGGTAGTAGATGGGGCCAAAGAAAATG 1396798
>seq5
Length=2767003
Score = 84.2 bits (92), Expect = 6e-11
Identities = 83/107 (78%), Gaps = 3/107 (3%)
Strand=Plus/Plus
Query 301825 ATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTA 301884
|| |||||||||||| |||| ||||| | |||| || ||||| || || ||||| ||
Sbjct 273498 ATTCGGGGAACACCAAGGGTGACGTT---CATGGAAGCCACACCGGCGAAATGGAACGTC 273554
Query 301885 TTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
|||||||| | |||||| |||||||||||||| || || ||||
Sbjct 273555 TTCAGAGTCATCTGAGTACCGGGCTCACCAATACTCTGGGCTCCAAT 273601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816826835817
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |