Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 seq2 168 6e-37 >seq3 Length=2943663 Score = 174 bits (192), Expect = 1e-38 Identities = 372/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 138436 ATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGA 138495 ||||| || ||| |||| | ||||| ||| || |||||| | || || ||||| Sbjct 1831228 ATGATTCGGTTTTTCATCTGCTCGTTCCACATGCCCAGCTTGATGAGATCCTTCATCAGC 1831287 Query 138496 TATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTG 138555 | ||| | ||| | || || || || |||||||||| ||| |||||| |||| Sbjct 1831288 CAGTGGTTGACGACGAGGAACTCGCCTGCTTGAACTCGACGAAGGTAGATGTTGGAGGTG 1831347 Query 138556 AAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTAC 138615 | ||||| || | ||||||| || |||||||||| ||||| || || ||||| Sbjct 1831348 TATGGCTCGAAACACTCGTTGTGGCCGAGAATCTGAGACGTGGAAGCCGTAGGCATAGGA 1831407 Query 138616 GCCACCAAAAGAGAATTCCGTAAACCGTGAA--GCTTGATTCGTTCCTTGAGCGACGACC 138673 ||||||| || || || || | |||||| || | || | |||||||| ||||| Sbjct 1831408 GCCACCAGCAGCGAGTTGCGCATACCGTGCTTGGCAAGGTTGG--CCTTGAGCAGCGACC 1831465 Query 138674 AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG 138733 ||||||||| ||| || | |||||||| | ||| |||| | | ||| |||| Sbjct 1831466 AGTCCCACAGATCCGAGGGAGTCTTGTTCCAGAGATCAAACTGAAGCTGACCCTTGCTTG 1831525 Query 138734 CGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCT 138793 | |||||||| |||||||| || || || | ||| |||| |||| || ||| | Sbjct 1831526 CAGGACTGCCCTCGTACGACTCATACGGTCCCAGATCTGCTGCCAGCTCGATGGACGCTT 1831585 Query 138794 CGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG--GCCTCGGC 138851 || ||| | | ||| || || ||| || || ||||| |||| ||||| | Sbjct 1831586 CGCAGGCAGCGTGGTAGATGGTCTCGAAGATGAGCACGTTGAG--TTCGGCAGCCTCAGG 1831643 Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 || ||||| |||||||| || || | ||| |||| ||||| ||||| || ||||| | Sbjct 1831644 ACTGTCGTAGGGCATGCGCAGTTTCATAAACACGTCTGCCAGTCCTTGGACACCCACGGC 1831703 Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971 | || ||||| || || |||| || ||| | | || || || |||| | || Sbjct 1831704 AATCGGACGATGACGTTTGTTGGACGTTTCTGCCTCCTTGACGGGGTAGCAGTTGGCCTC 1831763 Query 138972 GATGATTTTGTT 138983 |||||| |||| Sbjct 1831764 GATGATGCTGTT 1831775 >seq2 Length=4160336 Score = 168 bits (186), Expect = 6e-37 Identities = 1066/1685 (63%), Gaps = 72/1685 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGA 138417 |||||||||||||||||||| || || || | | || || | | || || || Sbjct 4111972 ATCTCCCACACGGTCTTGTACAGGTCCTTGATCTCCTGGGGGATGTTGGGGATGTTCTGC 4111913 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTG 138477 | | |||||| | || | ||| || || ||||| ||||| ||||| | || Sbjct 4111912 ACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCGTTCCACAGACCAACCTCA 4111853 Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 | || ||| || | ||| | ||| | | ||| || ||||| || | ||||| ||| Sbjct 4111852 ACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACTCACCAGCAAGCACTCGTCGA 4111793 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 |||||||||| |||| | ||||| || | |||||| || |||||||||| ||| Sbjct 4111792 GAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAAGTG 4111733 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TC 138655 | || || |||||| ||||||| || || || || | || | ||| || || Sbjct 4111732 GAAGCAGTAGGCATGGGGGCCACCAGCAGCGAGTTTCGCATTCC---AGTCTTCATGATC 4111676 Query 138656 GT-TCCTTGAG--CGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | ||||||| || | ||| ||||| | ||| || | |||||||| || Sbjct 4111675 TTGGCCTTGAGATCGTC--CCACTCCCAGAGCTCGGAGGGAGTCACGTTCCACAGGTCAA 4111618 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTT 138772 |||| | ||| || ||| ||| | | | | ||||| |||| ||| Sbjct 4111617 ACTGCAGGTCACCCTTGGAGGCAGGAGAGCCCTGGAAGGTCTCGTAAGCACCGTCCTCAA 4111558 Query 138773 GCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGAT 138832 | |||| ||||| ||||| | ||||| | ||| || || ||| ||||| | Sbjct 4111557 GGGCCATCTCGTAAGAAGCCTCAACGGCACCGTGGTAGATGGTCTCGAAGATCTGGATGT 4111498 Query 138833 TGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCA 138892 ||||| |||||| || |||| | |||| ||||| | |||| | || |||| Sbjct 4111497 TGAGCTTCTTGGCCTCCTCGGACTCGAAGGGCAGTCGGAGGGCCATGAAGGTATCAGCCA 4111438 Query 138893 GCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGA 138952 | || || || |||| | | || || || |||| || ||| || || | || Sbjct 4111437 GACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTGGACTTCTTGGCCTCAGGGA 4111378 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 ||| || |||||| || ||||| ||| | |||||||| | |||||| | ||| Sbjct 4111377 CAGGGTAGTAGTTTCGGTCAATGATGGCGTTGAGGTTTCGCACAATCACCTTGGCAATAT 4111318 Query 139013 GCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTG 139071 | | | | | | || ||||| | | | ||||| ||| || |||||| || Sbjct 4111317 -CGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGGTCTCGTC-TCGA-GT-GACAAAGGTG 4111262 Query 139072 TTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA 139131 | | || || || | |||||| || || || || || || ||| |||||| Sbjct 4111261 GGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGAAGAGTACTCGACA 4111202 Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191 || ||| ||||| || | ||||||| ||||| | || | ||| ||| |||||| Sbjct 4111201 ATCTCGCAACACAGGTTGGAAGACTTGATGGTACCCAGGTTCTTTTGGTTGGACTTTCGG 4111142 Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCT--CTATAA 139249 || || || || ||||| ||||| | || | || | ||| | |||| | | Sbjct 4111141 TTGCAGGCGTCCTTGTAGAGCATGAAGGGGTTACCGG-----ACTCG-GTCTGGCAGTCC 4111088 Query 139250 TGAATTTGAACAAGT-CCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCG----CG--- 139301 |||| || || || ||||| | ||| | | |||||||| || Sbjct 4111087 AGAATGTG-----GTACCACAGCTTCT-----GGGCAGGGATGGTTCGTCGACCTCGGCC 4111038 Query 139302 ------CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGAT 139354 |||||||| ||||| || | | ||| ||| ||||||||| ||||| || Sbjct 4111037 CTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCG-TCACCGTAGACGTCATCGAGGC 4110979 Query 139355 CGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGA 139414 | | |||| || || |||||||| | ||| || ||||| || ||| ||| ||||| Sbjct 4110978 CAGGGCACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGCTCCATGA 4110919 Query 139415 ACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACC 139472 |||| || || ||||| | ||| | | || ||| || || || |||| ||| ||| Sbjct 4110918 ACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGC--TCGGATCTCCTCCTTACC 4110861 Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532 ||| | || | ||| || || |||||| ||||||| || ||||| || || Sbjct 4110860 GTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTACAT 4110801 Query 139533 GGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589 ||| | || || | | ||||| || || ||||||| ||| | | || ||| | Sbjct 4110800 GGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCGACGTATCGAGCGGTGTTGTTGTA 4110741 Query 139590 TACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA- 139644 || |||| ||| ||| | | |||| | | || |||||||| | ||| ||| ||| Sbjct 4110740 GACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTGGT--TCCGGCAATGTAGGAT 4110683 Query 139645 CTGTTGCGAGCTCGGACGTCATGTACATTG--ATGCCGATTCCGCCGCCAAATTTGGATA 139702 | | || ||||||| || ||| || | | || || || || | | ||||| | Sbjct 4110682 CCGGTG---GCTCGGATGT--TGTGGATGGACAGACCAATACCTCCAGCGGACTTGGAGA 4110628 Query 139703 TTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTG 139761 | | | | ||| || | | || ||||| || || ||| |||||||| ||| || Sbjct 4110627 TGAGAGCACAAGTCTTG-AGGGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTG 4110569 Query 139762 ACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTC 139821 || || || || ||||| | || || | || || || |||| ||||| Sbjct 4110568 ACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCTGCGTTGTACAGGGTAGGGGAA 4110509 Query 139822 GCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCC 139881 ||||| ||||| | | ||||| | | ||| || || ||||| | |||| | Sbjct 4110508 GCGTGGGTGAAGTACTTCTGAGACATGTAGTTGTAGGTCTCAATGGCTCGGGCAATGTTG 4110449 Query 139882 CTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCG 139941 ||||||||||||||||| |||||||| | ||| || ||| || ||||| || ||| Sbjct 4110448 TCGCCGTGGATACCGACAGACACTCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCG 4110389 Query 139942 CCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTG 140001 || | || | ||| || | ||| ||||||||| |||||||||| | ||| || Sbjct 4110388 CCGTTGACTCGCAGCAGGTAGGCTCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTG 4110329 Query 140002 AAATC 140006 || || Sbjct 4110328 AAGTC 4110324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897369427480