Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 215 8e-50 seq2 147 3e-29 seq1 114 2e-19 seq3 87.8 3e-11 >seq5 Length=2767003 Score = 215 bits (238), Expect = 8e-50 Identities = 249/332 (75%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| ||||||||||||||| || ||||| Sbjct 1872423 ACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 1872364 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| ||| ||||| ||||||||||||||||||||||| Sbjct 1872363 CTTGAGCCAGAAGATGGAGGCGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 1872304 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||| ||||||||| |||| || | | || | | ||||||||| | |||||| Sbjct 1872303 GGCGATCAGCCGCTCGCCAAAGGT---CGACTCGTCGTCGGAGATCCACTTGAGCGCCCA 1872247 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| ||| | | |||| | || ||||||||| || |||| ||| | || Sbjct 1872246 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTC-GCT 1872188 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||||||| ||| |||||||| || |||||||| || || ||||||||||| | Sbjct 1872187 CCTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACGTTTCCGAGTGGATGTTCT 1872128 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | || |||||||||||| || ||||| ||| Sbjct 1872127 CCATCATGATCTGGAAGCCGTAGAAGCACTTG 1872096 Score = 163 bits (180), Expect = 4e-34 Identities = 204/279 (73%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||| |||||||||| || || ||||| ||| || | |||||||||| | Sbjct 1872104 AAGCACTTGGCCTCGGGGACCTGCACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTC 1872045 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || || ||| || || || ||||| || |||||| ||| ||| ||||||||| Sbjct 1872044 ACAATACCATCGGAAGCAGCAAAGAAGGCCAGCACGTGCGAGATGAAGAACCGCTCGTCG 1871985 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 | | ||||| | |||||| | || |||| |||||| || | ||||||||||||| Sbjct 1871984 TTGTTGAGCCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCAATCTCCTCGGCGGTC 1871925 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || || || ||||||||||| |||||||||| ||| ||| ||||| |||||||||| Sbjct 1871924 CAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAGATCTCGTGGTACTGGATGGGGAAG 1871865 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||| || | ||||||| |||||||||||| Sbjct 1871864 AGCACAAACCGGCGGTGGTTCTCCTTGAGCAGCGGCTCG 1871826 Score = 141 bits (156), Expect = 1e-27 Identities = 220/309 (71%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 |||| ||| ||| |||| || |||||||||||| | |||||||||| | | | Sbjct 919515 CGCTGCAGTACGGCTGGAAGGTGGAGCGCCACCTGATGGACAACGACCCCGTGCTGTTCA 919574 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 |||| ||||||||||| || | ||| ||| | |||| |||| | |||||| Sbjct 919575 ACCGACAGCCGTCGCTGCATAAAATGTCCATGATGGCCCACCGGGTGCGGGTCATGCCGT 919634 Query 429628 G-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 ||| |||||||||||||||||| | || ||| ||||||||||||| || ||||| Sbjct 919635 ACTCG-ACCTTCCGGCTCAACCTGTCGGTCACGTCGCCCTACAACGCCGATTTCGACGGA 919693 Query 429687 GACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGA--AGTCGC-CCAC 429743 ||||| ||||||||||| || || ||||| ||| | | || ||||| ||||| | Sbjct 919694 GACGAAATGAACCTGCATGTTCCTCAGTCCGAGGAGACGCGGGCCGAGCTGTCGCAGCTG 919753 Query 429744 ACCATGGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTC 429803 |||| ||| | || || |||||||| ||| ||||||||||| |||| || | Sbjct 919754 TGCATG---GTGCCGCTGCAGATTGTGTCGCCTCAGTCCAACAAGCCCGTCATGGGCATT 919810 Query 429804 GTGATGGAC 429812 ||| |||| Sbjct 919811 GTGCAGGAC 919819 Score = 136 bits (150), Expect = 6e-26 Identities = 393/598 (66%), Gaps = 10/598 (2%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||||||||||||| || || ||| |||||| ||| ||| |||||| || || Sbjct 1299990 AGATCAATCTTGGAGTTGGGATCAGAGGCAGACATCTTACCGCCCTGGGTGAGACCAGGA 1299931 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | || ||| ||||| |||||| | | | |||| || Sbjct 1299930 ACCATAGGGTTCATCATGTGTGCTCGCTTCTTGTAGCCGATAGAGGTGAGGTTTTCCTCA 1299871 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 |||| | |||||||||| |||||||| || || ||||| ||||| ||| | |||| | Sbjct 1299870 GCAAGGACAAAGATCTTTCGCTGGTCAACACCACCGAACTGAGCGTCAACGCCCAGGTAC 1299811 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCC 2411622 | |||||| ||||||||||| || ||||| | || | ||| | ||||| | || Sbjct 1299810 TCCTCGTCAAGGGCCTGCATCAGAGGGTAAATAAGACCGGAAAGCAGGGGGTTATCGACC 1299751 Query 2411623 ATCTTGACCACCTGGGCGGCGG--CCTTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCA 2411680 |||||| || | ||| | | | || ||| ||| ||| | || || | | Sbjct 1299750 TGCTTGACGACATCGGCACCAGCTCGCTTGGCGTCGT--TGACAGAGACTCGGTTGGAGA 1299693 Query 2411681 GGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTA--ATCGCTGCCGCGCACAAA 2411738 | || || || | ||||| |||||| ||| | | |||| ||| ||||| Sbjct 1299692 GCTTGAACAGATCCATGGTGTACTCGGCGCTCAGCTCGAAGGATCG--GCCAATGACAAA 1299635 Query 2411739 TTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTA 2411798 | || || || || || || || |||| || |||||||| ||||||| Sbjct 1299634 TGTCAGCTTGTCGAGAGGCACACCGATAGAACGGAGAATAGCCTTGATCATGTACTCGTA 1299575 Query 2411799 CCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTG 2411858 | || ||||||| || || ||| || | ||| ||||| ||| ||| || Sbjct 1299574 GTACTGGACTCGGTGCTGAACCAGCTCCAGAGGGGCCTTCATGTTGTCAAGGAAGGCATG 1299515 Query 2411859 CACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAA 2411918 || |||||| | |||||| | ||| ||| || || || |||||||| | || Sbjct 1299514 CAAGTCGGCGAGCAGGATCTTGACCTCACAGCCAGCAGCCAGGAAGTCGGCAATCTTGGT 1299455 Query 2411919 GATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||||||||||||||||| ||| |||||||| || || || || || ||||| || || Sbjct 1299454 CATGGGCACAAAGTAGCCACAG-TGGGGCTTTCCAGTTGGTGCAGTTCCCCAGTAGAT 1299398 Score = 136 bits (150), Expect = 6e-26 Identities = 230/329 (70%), Gaps = 8/329 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || ||| ||| ||| |||||| |||||||||||||| | | Sbjct 1872745 TGACGCCGGCCTTCTGGTAGTCGGACACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCA 1872686 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| | |||| ||| | |||| Sbjct 1872685 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGAGTTGCCGA 1872626 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||||||||| || |||||||||||||||||||| |||||||| Sbjct 1872625 GAGCAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCA 1872566 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||| || | |||||| | ||| | | ||||| | |||||| | ||||||| Sbjct 1872565 TTCCGAGCAGTCCGCAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATACCAACGGCCT 1872506 Query 794131 CGATGATGATCTGCCTGGGCA--CGTC--GGACGACGGCTTGTCGACGAGCATCGTGTAG 794186 ||| || | | ||| | || | || ||| | | || |||| | | || | || Sbjct 1872505 CGACAATCA-CGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTG---CGAGAAG 1872450 Query 794187 AGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 ||||| |||||||||||| |||||||| Sbjct 1872449 AGCAGACAGGCAAAGTCGGTGTGCAGACC 1872421 >seq2 Length=4160336 Score = 147 bits (162), Expect = 3e-29 Identities = 326/489 (67%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| |||| || ||||||||||| | |||||||| Sbjct 4110770 CTGGTCGACGTATCGAGCGGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 4110711 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| || | ||| || | ||||| || | || Sbjct 4110710 GGTACCGTTGGTTCCGGCAATGTAGGATCCGGTGGCTCGGATGTTGTGGATGGACAGACC 4110651 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || | |||||||||||| || || | || || || ||||||||||| || Sbjct 4110650 AATACCTCCAGCGGACTTGGAGATGAGAGCACAAGTCTTGAGGGTGTCGTAGATGCCGTC 4110591 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||||| | || || |||||||| | || || | | || || Sbjct 4110590 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 4110531 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||| | || || || | || ||| | ||| || |||||| | |||||| Sbjct 4110530 TGCGTTGTACAGGGTAGGGGAAGCGTGGGTGAAGTACTTCTGAGACATGTAGTTGTAGGT 4110471 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | | || || | | || |||| || | | |||| | || Sbjct 4110470 CTCAATGGCTCGGGCAA-----TGTT----GTCG------CCGTGGATACCGACAGACAC 4110426 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||| | ||||||||||||| | || ||| || || |||||||| Sbjct 4110425 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCGCCGTTGACTCGCAGCAGGTAGGC 4110366 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || ||||||| | ||||||||| ||||| | ||| || |||| | | ||||| Sbjct 4110365 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 4110306 Query 2074020 GGCGTCGAG 2074028 | ||| ||| Sbjct 4110305 GCCGTTGAG 4110297 Score = 87.8 bits (96), Expect = 3e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||||||| |||| || | || ||||| || || ||| |||||||||| Sbjct 4110923 CATGAACAGGTCGGGGATCCAGAGAGCCAGGAACAGATCTCGGGCTCGGATCTCCTCCTT 4110864 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| ||| ||| | |||| || ||| ||||||| ||||||||||| Sbjct 4110863 ACCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGACGTCATCGTGCCAGGGCTCCAGGTA 4110804 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||| || |||||| ||| || Sbjct 4110803 CATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCC 4110771 >seq1 Length=4858313 Score = 114 bits (126), Expect = 2e-19 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 2035593 TGGGACAAGGCCTTT-TGCGAGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGC 2035651 |||||| | |||| ||| |||| ||||| | || |||||| | ||||| |||| Sbjct 490582 TGGGACTACAACTTTCTGC-AGGTGGACCAGGAGATGCTGTTTGAGATCATCCTGACCGC 490524 Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 || ||||| ||||||||||| || || || |||| |||||||||||||||||| | || Sbjct 490523 AAATTACCTGGACATCAAGCCTCTGCTGGACGTGGGCTGCAAGACCGTGGCCAACATGAT 490464 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||||| | |||||||| || || ||||| ||||| Sbjct 490463 CAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAACAT 490422 Score = 113 bits (124), Expect = 7e-19 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||| || || ||||| || | ||||||| ||||||| || ||| | | Sbjct 2893714 GTACTTGGCAACAGCTCGAGTACCGTCACCGGTGGCGTGCTTGGCCAGCTCTCCGGGGAG 2893773 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || || |||||||||||||| || | ||| ||| |||| | | Sbjct 2893774 GATAAGTCGGACAGCGGTCTGGATCTCTCGAGAAGTGATGGTGGACTTCTTGGTGTAGGT 2893833 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||| | |||||||||| | | || |||| || |||||||| || |||||||| Sbjct 2893834 GGCCAGCTTGGAGGCCTCGGTGGCAACTCGCTCGAAGATATCGTTGACGAAGGAGTTCAT 2893893 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| ||||| | | | ||||||| || ||||||||| |||||| ||||||||||| Sbjct 2893894 GATGGACATGGCTCGGGTGGAGATACCAGTGTCGGGGTGGGTCTGCTTCAGCACCTTGTA 2893953 >seq3 Length=2943663 Score = 87.8 bits (96), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 || ||||| ||||||||| || |||||||| || | |||| | |||||||||||||| Sbjct 1831915 GGTGACGAGTACTGGACGATTTCCGTGCACAGATTCGACGACTTGATGGTGCCCAGGTTC 1831974 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 ||||||||| | |||| | |||||||| |||||| | || | || || ||| Sbjct 1831975 TGCTGGTTGGACTTTGCGTTGCAGCTGTCCTTGTAGAGCATGAACGGTCCTCCGGTTTCG 1832034 Query 2071684 ATCTGCGCCGTGACGATGGCC 2071704 ||||| ||||| ||| ||| Sbjct 1832035 ATCTGACTCGTGAGGATCGCC 1832055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242038642999