Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 107 5e-18 seq1 105 2e-17 >seq2 Length=4160336 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || ||||| ||| ||| Sbjct 1074826 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 1074885 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| |||||| || Sbjct 1074886 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 1074945 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || || || | || | | || |||||| || Sbjct 1074946 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 1075005 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||| ||||| || || ||| || |||| ||| Sbjct 1075006 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 1075044 >seq1 Length=4858313 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| |||||| || |||| || |||||||| ||| Sbjct 3613534 AAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTCATTTTCGCCGGTAAG 3613475 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || ||| | ||| || |||| |||||| ||||||| ||||||||||| || Sbjct 3613474 CAGCTCGAGGACGGACGAACTCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 3613415 Query 206374 CTTGTTTTGAGACTTCGA 206391 || ||| | |||||||| Sbjct 3613414 CTGGTTCTCCGACTTCGA 3613397 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || ||||| | || || || || || Sbjct 3612948 CAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGAT 3612889 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || ||| |||||| || Sbjct 3612888 ACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 3612829 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||||| || |||||| | || || ||| | ||| || |||| |||||| || Sbjct 3612828 CGACTTATCTTCGCTGGTAAGCAGCTCGAGGACGGACGAACTCTGTCCGACTACAACATC 3612769 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||||||||||| || || || | |||| ||| Sbjct 3612768 CAGAAGGAGTCTACTCTCCATCTGGTCCTCCGACTCCGA 3612730 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| | || || || ||||||||| |||| Sbjct 3612708 AAGACCCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCTTCTGACACTATCGACAAC 3612649 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || ||||||||||| Sbjct 3612648 GTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTC 3612589 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || ||| | || | |||| |||||| ||||||| || || Sbjct 3612588 GCCGGTAAGCAGCTTGAGGACGGACGAACCCTCTCCGACTACAACATCCAGAAGGAATCC 3612529 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| |||||||| | |||| ||| Sbjct 3612528 ACTCTCCACCTTGTGCTCCGACTCCGA 3612502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820179174761