Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 331 1e-84 seq2 154 2e-31 seq1 102 1e-15 seq3 86.0 9e-11 >seq5 Length=2767003 Score = 331 bits (366), Expect = 1e-84 Identities = 419/566 (74%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||||| || |||| ||| ||||| || |||||||||| ||||| Sbjct 1871826 CGAGCCGCTGCTCAAGGAGAACCACCGCCGGTTTGTGCTCTTCCCCATCCAGTACCACGA 1871885 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||||||||||||| | || | Sbjct 1871886 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATC 1871944 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||||| |||| || | |||||| | ||| | | |||||||||| |||||| Sbjct 1871945 TCGGCAAGGACATGGGCGACTGGGAGAACCGGCTCAACAACGACGAGCGGTTCTTCATCT 1872004 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| || ||||| ||| || || |||||| || ||| ||||||||||| | Sbjct 1872005 CGCACGTGCTGGCCTTCTTT-GCTGCTTCCGATGGTATTGTGAACGAGAACCTGGTGGAG 1872063 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || ||||| || | || ||||| | || ||||| ||||||||| Sbjct 1872064 CGATTCTCCGGCGAGGTGCAGGTCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATG 1872123 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| ||||| |||||||| ||||||||||| ||| |||||||||| Sbjct 1872124 ATGGAGAACATCCACTCGGAAACGTACTCGCTGCTGATCGACACATACATCAAGGACCCC 1872183 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 ||| | ||| |||| || ||||||||| || | || | | | ||| ||||| Sbjct 1872184 AAGGAG-CGAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGC 1872242 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||||| | ||||||||| | | || | ||||| ||||| ||||||||| || Sbjct 1872243 CGACTGGGCGCTCAAGTGGATCTCCGACGA-CGAGTCGAC-CTTTGGCGAGCGGCTGATC 1872300 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||||| ||||||||||||||| ||||| ||| ||| | ||||||| |||||| Sbjct 1872301 GCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCCATCTTCTGGCTC 1872360 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| || ||||||||||| || Sbjct 1872361 AAGAAGCGAGGTCTCATGCCCGGCCT 1872386 Score = 143 bits (158), Expect = 4e-28 Identities = 236/335 (70%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||||||||||||||||| | || |||| ||| || || | Sbjct 1872421 GGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCGCACCTCGAGAACCGACCCTCCAAG 1872480 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | | | || | | || ||||||||||| | |||||| | ||||| | | ||| Sbjct 1872481 AAGATTGTCGAGGACGTGATTGTCGAGGCCGTTGGTATCGAGCAGGAGTTCCTGACCGAC 1872540 Query 1456568 TCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATT 1456627 | ||||| | || |||| |||||||||| ||||||||||||||||||||| || Sbjct 1872541 GCTCTGCCCTGCGGACTGCTCGGAATGAACGCCAA-GCTCATGTGCCAGTACATTGAGTT 1872599 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAAC 1456687 | ||||||||||| ||||| | || |||||| | ||| |||| | ||||| Sbjct 1872600 T-GTCGCCGACCGTCTGCTGGTTGCTCTCGGCAACTCC-AAGGTCTACAACTCCACCAAC 1872657 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || ||| | |||||| |||||||| | |||||||||||||| |||||| || Sbjct 1872658 CCCTTCGACTTCATGGAGAACATCTCGCTGGCCGGCAAGACCAACTTCTTCGAGAAGCGG 1872717 Query 1456748 GTG-GCGAGTACGCCAAGGCCGGCGTCACCGCCAA 1456781 ||| ||| ||| ||||||||||||| ||||| Sbjct 1872718 GTGTCCGACTACCAGAAGGCCGGCGTCATGGCCAA 1872752 Score = 127 bits (140), Expect = 3e-23 Identities = 207/294 (70%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 1817496 GCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAG-GGCCACGTTCATGGTGT 1817554 ||| |||| ||||||||||| ||| |||||||| ||| || ||| | | || | | Sbjct 919807 GCCCATGACGGGCTTGTTGGACTGAGGCGACACAATCTGCAGCGGCACCATGCACAG-CT 919749 Query 1817555 GCGTCACCTCGGCGCGCG-CGTCTCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGT 1817613 ||| || |||||| |||| | ||| ||||| || ||||| |||||||| ||||| |||| Sbjct 919748 GCGACAGCTCGGCCCGCGTCTCCTCGGACTGAGGAACATGCAGGTTCATTTCGTCTCCGT 919689 Query 1817614 CAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCA 1817673 | || ||||| ||||||| |||||| | |||||||| ||| | ||| | |||| Sbjct 919688 CGAAATCGGCGTTGTAGGGCGACGTGACCGACAGGTTGAGCCGGAAGGTCGAGTACGGCA 919629 Query 1817674 TGGGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCA 1817733 || | |||| ||| | |||||| | || || || ||||| ||||| | || Sbjct 919628 TGACCCGCACCCGGTGGGCCATCATGGACATTTTATGCAGCGACGGCTGTCGGTTGAACA 919569 Query 1817734 CCACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCCAATTTGCAGCG 1817787 ||||| |||| | | |||||| ||||| || |||| || ||||||| Sbjct 919568 GCACGGGGTCGTTGTCCATCAGGTGGCGCTCCACCTTCCAGCCGTACTGCAGCG 919515 >seq2 Length=4160336 Score = 154 bits (170), Expect = 2e-31 Identities = 214/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| ||| |||||| || | || || || | || || Sbjct 4110471 ACCTACAACTACATGTCTCAGAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCA 4110530 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | || |||| |||||||| || || | ||||||||| ||| || ||| Sbjct 4110531 GGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATC 4110590 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||| || || |||||||||||| | || || || || Sbjct 4110591 GACGGCATCTACGACACCCTCAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATT 4110650 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||||| | || ||| | || ||||| | || || |||||||| Sbjct 4110651 GGTCTGTCCATCCACAACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACC 4110710 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||||||||| || || | ||| |||| || || |||||||||||| Sbjct 4110711 TCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAG 4110770 Score = 105 bits (116), Expect = 1e-16 Identities = 323/496 (65%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 262922 TGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCA 262981 |||| |||||| |||| ||||| | |||||| || || | || || ||||| || ||| Sbjct 4111693 TGCGAAACTCGCTGCTGGTGGCCCCCATGCCTACTGCTTCCACTTCTCAGATTCTCGGCT 4111752 Query 262982 ACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCG 263041 || |||| |||||| | ||| |||||| ||| | || || ||||| | || | Sbjct 4111753 TCAACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGTG 4111812 Query 263042 ACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGC 263101 | || | ||||||| | ||| ||||| | |||| | | || ||||||| | Sbjct 4111813 AGTTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAA-C 4111871 Query 263102 CCGACTTTCGCGA-CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAG 263160 ||| | || ||| || | || | | || || |||||| | | | || Sbjct 4111872 GAGACCATGAAGAACCGAATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACA-- 4111929 Query 263161 GAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTG 263220 | || | || |||||| || | |||||||||||||||| | | | | Sbjct 4111930 ----TCCCCCAGGAGATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 4111985 Query 263221 ACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTG 263280 | ||| || ||||| |||||||| | |||| | |||||| |||||| |||||| | Sbjct 4111986 ATCATCGAGATGGCTGCCGACCGATCCCCCTTCATTGACCAGTCCCAGTCCCTCAACATC 4112045 Query 263281 TACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGT 263337 || || ||||| || || | || |||| || |||||| ||| | ||| Sbjct 4112046 CACATCAAGGACCCCACCATGGGCAAG---CTCACTTCCATGCACTTCTACGGCTGGAAG 4112102 Query 263338 CGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAA 263397 || |||||||| || |||||||| ||||| ||| | | |||||| | |||| || Sbjct 4112103 AAGGGTCTCAAGACCGGTATGTACTACCTGCGAACCATGGCTGCTGCCGCCCCCATCCAG 4112162 Query 263398 TTCACCGTCGATCAGG 263413 |||||| |||| |||| Sbjct 4112163 TTCACCATCGACCAGG 4112178 >seq1 Length=4858313 Score = 102 bits (112), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| |||||| || | | ||| Sbjct 2893968 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCCGACACTGGT-----ATC- 2893915 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| || |||||||| || |||| || | | | Sbjct 2893914 TCCACCCGAGCCATGTCCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGAGTTGCC 2893855 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| ||||| || || |||| ||| ||| | || |||||| Sbjct 2893854 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 2893795 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 |||||||| || || || ||| | | ||| || ||||||| ||||||| Sbjct 2893794 CAGACCGCTGTCCGACTTATCCTCCCCGGAGAGCTGGCCAAGCACGCC 2893747 >seq3 Length=2943663 Score = 86.0 bits (94), Expect = 9e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 262118 CATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAAC 262177 || ||||| ||||| || | |||| ||||||||||| | |||| | |||| Sbjct 1832039 CAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCAAAGTCCAAC 1831980 Query 262178 CAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCG 262237 ||||||||||||||||||| | | | || |||||||| || |||||||||| ||| Sbjct 1831979 CAGCAGAACCTGGGCACCATCAAGTCGTCGAATCTGTGCACGGAAATCGTCCAGTACTCG 1831920 Query 262238 TCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 || ||| |||| ||||||||||| || || || |||| |||||||| Sbjct 1831919 TCACCCGAAGAGGTGGCGGTGTGCAACCTGGCGTCTGTAGCTTTGCCTGAGTTTGTC 1831863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807245474642