Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016-
03-01] 41 sequences; 21,900,276 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 1e-21
seq1 111 1e-19
>seq2
Length=4160336
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | |||||| |||| || ||||||||||| || ||
Sbjct 1075014 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1074955
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| |||| | |||||||||| |||||| ||| | ||
Sbjct 1074954 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1074896
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || ||||| || | || || |
Sbjct 1074895 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGA 1074836
Query 35724 CAAATATCTGCATT 35737
|||| |||||||||
Sbjct 1074835 CAAAAATCTGCATT 1074822
Score = 105 bits (116), Expect = 6e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | ||||| |||| || |||||||| || || ||
Sbjct 1736829 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1736888
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| |||| || |||||||||| |||||| ||| | ||
Sbjct 1736889 AATCAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1736947
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || || || || | || || |
Sbjct 1736948 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGA 1737007
Query 35724 CAAATATCTGCA 35735
|||| || ||||
Sbjct 1737008 CAAAGATTTGCA 1737019
>seq1
Length=4858313
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||| ||| | ||| |||||| || |||||||| |||| || ||||| |||| ||
Sbjct 3612743 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 3612802
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
||||||||||| || || || | ||||||||||||| |||| | ||||||||||
Sbjct 3612803 AGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGA 3612862
Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| ||| | |||| | | || ||| || || ||||| | ||||| || ||
Sbjct 3612863 ATCTTGGACTTGA-CGTTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTT 3612921
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||| || || ||||| ||||||||
Sbjct 3612922 TCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951
Score = 102 bits (112), Expect = 7e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | |||||| | || || ||||||||||| || ||
Sbjct 3613199 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 3613258
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| |||| || |||||||||| |||||| ||| | ||
Sbjct 3613259 AATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3613317
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || ||| || || ||||| | ||||| || || || || | || ||||
Sbjct 3613318 TGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCA 3613377
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 3613378 CGAAAATCTGCAT 3613390
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| | |||||| |||| || ||||||||||| || ||
Sbjct 3612533 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAG 3612592
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||||| || | | |||||||||| |||||| ||| | |||
Sbjct 3612593 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 3612651
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| || || ||||| | ||||| || || || || | || |||||
Sbjct 3612652 GTCGATAGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCAC 3612711
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 3612712 GAAAATCTGCAT 3612723
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||| ||| | ||| |||||| || |||||||| |||| || ||||| |||| ||
Sbjct 3613410 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGTCCGTCCTCG 3613469
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
||||||||||| || || || | ||||||||||||| |||| | ||||||||||
Sbjct 3613470 AGCTGCTTACCGGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 3613529
Query 35648 ATCTT 35652
|||||
Sbjct 3613530 ATCTT 3613534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793368968280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |