Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20sp._20JCM_2030695_20[genbank_20GCA_5F001602355.1_202016- 03-01] 41 sequences; 21,900,276 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq1 122 9e-23 seq3 91.5 1e-13 >seq2 Length=4160336 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||||||| || ||||| || ||||| ||||| || ||||||||||| | Sbjct 1736794 CCTCCTCGGAGTCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1736853 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| ||||| || ||||||| |||||||| || || || Sbjct 1736854 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 1736913 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 1736914 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 1736973 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || ||||| || || || | || || || || ||||||| Sbjct 1736974 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1737019 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||||| ||||| || || ||||| ||||| || ||||||||||| | Sbjct 1075049 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1074990 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | |||||||| || || || Sbjct 1074989 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1074930 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 1074929 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1074870 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 || || || || || |||||||| | || || || ||||| ||||||| Sbjct 1074869 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1074821 Score = 123 bits (136), Expect = 3e-23 Identities = 391/600 (65%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || || | ||||||||| || || ||| || || ||| | |||| || Sbjct 4110368 CTACCTGCTGCGAGTCAACGGCGCTGTTGCCGAGCGACCCCAGCAGATGATCATGCGAGT 4110427 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || |||||||| |||||| | ||| | || || ||| | ||||| Sbjct 4110428 GTCTGTCGGTATCCACGGCGACAACATTGCCCGAGCCATTGAGACCTACAACTACATGTC 4110487 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 | ||| | || || |||||||| || ||| ||| ||| || || | ||| || Sbjct 4110488 TCAGAAGTACTTCACCCACGCTTCCCCTACCCTGTACAACGCAGGAACCCCCCAGCCCCA 4110547 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 |||| |||||||| | | | |||| || ||| |||||||||||| ||| |||| Sbjct 4110548 GATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTACGACAC 4110607 Query 7764 GCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 || | || ||| || || ||||| | || || || || |||||| | | || Sbjct 4110608 CCT-CAAGACTTGTGCTCTCATCTCCAAGTCCGCTGGAGGTATTGGTCTGTCCATCCACA 4110666 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 || | || |||| ||| | ||| | |||||||| | ||| |||| | | || Sbjct 4110667 ACATCCGAGCCACCGGATCCTACATTGCCGGAACCAACGGTACCTCCAACGGTATCGTGC 4110726 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCA 7939 ||||| |||| || | ||| ||| | | ||| | || |||||||| || ||||| Sbjct 4110727 CCATGCTGCGTGTCTACAACAACACCGCTCGATACGTCGACCAGGGAGGCAACAAGCGAC 4110786 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCT-AAAT 7998 || ||| |||||| || ||||||| ||||||| ||| | | || ||| || | Sbjct 4110787 CCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACGATGACGTCTTCG-AGTTCTGCGAG 4110845 Query 7999 CTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058 ||||| ||| ||| || || | | ||| || ||||| ||| | | | ||| Sbjct 4110846 CTGCGAAAGAACCACGGTAAGGAGGAGATCCGAGCCCGAGATCTGTTCCTGGCTCTCTGG 4110905 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118 | ||||| ||||| ||| ||| || | |||| | ||| | |||||||||||| Sbjct 4110906 ATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCTCATGTGCCCC 4110965 >seq1 Length=4858313 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | ||| ||||| || ||||||||||| || |||||||||||| Sbjct 3612497 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAG 3612556 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || || | |||||||| || || || Sbjct 3612557 AGGGTTCGTCCGTCCTCAAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 3612616 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| || || || || Sbjct 3612617 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCAGAAGACTCGACC 3612676 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || |||||||| ||||| Sbjct 3612677 TCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTCACGAAAATCTGCAT 3612723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | || || || || || || ||||| || |||||||||||| Sbjct 3612725 CCACCTCGGAGTCGGAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3612784 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || || || | |||||||| || || || Sbjct 3612785 AGAGTTCGTCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 3612844 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || ||||| || || || Sbjct 3612845 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAGGACTCAACC 3612904 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || || || || ||||| Sbjct 3612905 TCGAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 3612951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 134514 AGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTG 134573 || || || ||||| || ||||||||||| | ||| | || || ||||| || Sbjct 3613191 AGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTA 3613250 Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || ||||| | |||||||| || || || ||||| || || || || || || Sbjct 3613251 CCAGCGAAAATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 3613310 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| ||| | || ||||| || || || |||||||| ||||| || || || | Sbjct 3613311 TTGACGTTGTCAATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTGAGG 3613370 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||| ||||| Sbjct 3613371 GTCTTCACGAAAATCTGCAT 3613390 >seq3 Length=2943663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 339/528 (64%), Gaps = 5/528 (1%) Strand=Plus/Minus Query 7882 CCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGC 7938 |||||| | | |||||||| ||| | | || |||| |||||||| ||||| ||| Sbjct 1832408 CCCATGCTCAGGGTGTTCAACAACACCGCACGGTATGTCGACCAGGGTGGAAACAAGCGT 1832349 Query 7939 AAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAAT 7998 || || |||||||||| ||||||| ||||| || || ||| || | || || Sbjct 1832348 CCCGGAGCGTTTGCCATCTATCTGGAGCCCTGGCATGCCGATATTCTCGATTTCCTGAAC 1832289 Query 7999 CTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGG 8058 ||||| ||| || || || | || ||| | || || |||| || ||||||| Sbjct 1832288 CTGCGGAAAAACCACGGAGCAGAGGAGAACAGAGCAAGAGACCTGTTCTACGCATTGTGG 1832229 Query 8059 GTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118 ||||| || ||||| |||| ||| || | | || | | ||||| | | || || Sbjct 1832228 GTGCCGGACCTGTTCATGAAGCGGGTCGAAAGAGGCGAAAAGTGGTCCTTGTTCTGTCCA 1832169 Query 8119 GATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | |||| | || |||| | || | | ||||| || ||| | | Sbjct 1832168 AAGAAGGCCCCTGGGCTGGAAGACGTGTGGGGACCTGAGTTTGAGCAGAAATACGAGGAG 1832109 Query 8179 TACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATT 8238 ||||| | | ||| || | ||| | || |||| || ||| | || || Sbjct 1832108 TACGAGAAAAAGGGCTTGTTCAACGCGCAGATCAACGCGCAGGAGCTGTTCAAGGCGATC 1832049 Query 8239 ATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCC 8298 || |||| | ||||||||| |||| |||||| ||||| ||| |||||||| Sbjct 1832048 CTCACGAGTCAGATCGAAACCGGAGGACCGTTCATGCTCTACAAGGACAGCTGCAACGCA 1831989 Query 8299 AAAAGCAATCAAAGCAACGTGGGCACCAT-TTGTTGCAGCAATCTGTGCGCTGAAATTGT 8357 || ||| || ||| |||||||||| || | | ||||||||| | ||||| || Sbjct 1831988 AAGTCCAACCAGCAGAACCTGGGCACCATCAAGTCGTCG-AATCTGTGCACGGAAATCGT 1831930 Query 8358 ACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT 8405 |||||| | ||||| || ||||| || ||||| || ||||| || Sbjct 1831929 CCAGTACTCGTCACCCGAAGAGGTGGCGGTGTGCAACCTGGCGTCTGT 1831882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398140983320